(21 nodes) Transcription factor TFIIH holo complex, and Transcription factor TFIIA complex network (Cucumis sativus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_7G390040	Helicase ATP-binding domain-containing protein. (758 aa)
	Csa_6G188660	Uncharacterized protein. (536 aa)
	Csa_6G490020	CYCLIN domain-containing protein; Belongs to the cyclin family. (332 aa)
	Csa_6G517270	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)
	Csa_5G152930	Uncharacterized protein. (821 aa)
	Csa_6G502590	Uncharacterized protein. (443 aa)
	Csa_5G169080	General transcription factor IIH subunit. (423 aa)
	Csa_4G049080	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (277 aa)
	Csa_4G098200	Uncharacterized protein. (303 aa)
	Csa_4G338430	Uncharacterized protein. (303 aa)
	Csa_4G415910	TFIIB-type domain-containing protein. (312 aa)
	Csa_4G338420	BSD domain-containing protein. (388 aa)
	Csa_3G036500	Uncharacterized protein. (70 aa)
	Csa_3G624050	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (538 aa)
	Csa_2G401990	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
	Csa_2G072450	Uncharacterized protein. (295 aa)
	Csa_1G024870	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (418 aa)
	Csa_2G401490	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
	Csa_1G020880	HTH TFE/IIEalpha-type domain-containing protein. (476 aa)
	Csa_1G257890	Uncharacterized protein. (894 aa)
	Csa_1G599390	Uncharacterized protein. (200 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G020880	Csa_1G024870	A0A0A0LSL9	A0A0A0LPN4	HTH TFE/IIEalpha-type domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.992
Csa_1G020880	Csa_1G257890	A0A0A0LSL9	A0A0A0LTR9	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.949
Csa_1G020880	Csa_1G599390	A0A0A0LSL9	A0A0A0LWT4	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.993
Csa_1G020880	Csa_2G072450	A0A0A0LSL9	A0A0A0LMM2	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.993
Csa_1G020880	Csa_2G401490	A0A0A0LSL9	A0A0A0LQ01	HTH TFE/IIEalpha-type domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.972
Csa_1G020880	Csa_2G401990	A0A0A0LSL9	A0A0A0LMF8	HTH TFE/IIEalpha-type domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.972
Csa_1G020880	Csa_3G036500	A0A0A0LSL9	A0A0A0L4F5	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.986
Csa_1G020880	Csa_3G624050	A0A0A0LSL9	A0A0A0LCA6	HTH TFE/IIEalpha-type domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.996
Csa_1G020880	Csa_4G049080	A0A0A0LSL9	A0A0A0KWU5	HTH TFE/IIEalpha-type domain-containing protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.998
Csa_1G020880	Csa_4G098200	A0A0A0LSL9	A0A0A0KXT8	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.949
Csa_1G020880	Csa_4G338420	A0A0A0LSL9	A0A0A0L1N5	HTH TFE/IIEalpha-type domain-containing protein.	BSD domain-containing protein.	0.981
Csa_1G020880	Csa_4G338430	A0A0A0LSL9	A0A0A0KYD2	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.981
Csa_1G020880	Csa_4G415910	A0A0A0LSL9	A0A0A0KYQ5	HTH TFE/IIEalpha-type domain-containing protein.	TFIIB-type domain-containing protein.	0.980
Csa_1G020880	Csa_5G152930	A0A0A0LSL9	A0A0A0KKI0	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.959
Csa_1G020880	Csa_5G169080	A0A0A0LSL9	A0A0A0KPM4	HTH TFE/IIEalpha-type domain-containing protein.	General transcription factor IIH subunit.	0.995
Csa_1G020880	Csa_6G188660	A0A0A0LSL9	A0A0A0KE66	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.990
Csa_1G020880	Csa_6G490020	A0A0A0LSL9	A0A0A0KJE5	HTH TFE/IIEalpha-type domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.991
Csa_1G020880	Csa_6G502590	A0A0A0LSL9	A0A0A0KM51	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.980
Csa_1G020880	Csa_6G517270	A0A0A0LSL9	A0A0A0KK55	HTH TFE/IIEalpha-type domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.995
Csa_1G020880	Csa_7G390040	A0A0A0LSL9	A0A0A0K5Q0	HTH TFE/IIEalpha-type domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.994