13 items (Cucumis sativus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_1G682130	Uncharacterized protein. (394 aa)
	Csa_2G036090	Uncharacterized protein. (517 aa)
	Csa_2G270830	Uncharacterized protein. (315 aa)
	Csa_3G134680	Uncharacterized protein. (522 aa)
	Csa_3G055970	Uncharacterized protein. (228 aa)
	Csa_6G504425	Uncharacterized protein. (74 aa)
	Csa_6G517050	TPR_REGION domain-containing protein. (913 aa)
	Csa_1G682630	Uncharacterized protein. (516 aa)
	Csa_6G319790	WD_REPEATS_REGION domain-containing protein. (476 aa)
	Csa_7G431430	Uncharacterized protein. (303 aa)
	Csa_7G431360	Uncharacterized protein. (1502 aa)
	Csa_1G042680	Uncharacterized protein. (256 aa)
	Csa_1G144280	Uncharacterized protein. (532 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G042680	Csa_1G144280	A0A0A0LQG2	A0A0A0LSI4	Uncharacterized protein.	Uncharacterized protein.	0.980
Csa_1G042680	Csa_1G682130	A0A0A0LQG2	A0A0A0LYA5	Uncharacterized protein.	Uncharacterized protein.	0.981
Csa_1G042680	Csa_1G682630	A0A0A0LQG2	A0A0A0M0E8	Uncharacterized protein.	Uncharacterized protein.	0.981
Csa_1G042680	Csa_2G036090	A0A0A0LQG2	A0A0A0LGN2	Uncharacterized protein.	Uncharacterized protein.	0.978
Csa_1G042680	Csa_2G270830	A0A0A0LQG2	A0A0A0LJ81	Uncharacterized protein.	Uncharacterized protein.	0.976
Csa_1G042680	Csa_3G055970	A0A0A0LQG2	A0A0A0L647	Uncharacterized protein.	Uncharacterized protein.	0.993
Csa_1G042680	Csa_3G134680	A0A0A0LQG2	A0A0A0L6Z6	Uncharacterized protein.	Uncharacterized protein.	0.998
Csa_1G042680	Csa_6G319790	A0A0A0LQG2	A0A0A0KD37	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.992
Csa_1G042680	Csa_6G504425	A0A0A0LQG2	A0A0A0KM95	Uncharacterized protein.	Uncharacterized protein.	0.992
Csa_1G042680	Csa_6G517050	A0A0A0LQG2	A0A0A0KLE6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.986
Csa_1G042680	Csa_7G431360	A0A0A0LQG2	A0A0A0K6R7	Uncharacterized protein.	Uncharacterized protein.	0.960
Csa_1G042680	Csa_7G431430	A0A0A0LQG2	A0A0A0KBN6	Uncharacterized protein.	Uncharacterized protein.	0.952
Csa_1G144280	Csa_1G042680	A0A0A0LSI4	A0A0A0LQG2	Uncharacterized protein.	Uncharacterized protein.	0.980
Csa_1G144280	Csa_1G682130	A0A0A0LSI4	A0A0A0LYA5	Uncharacterized protein.	Uncharacterized protein.	0.960
Csa_1G144280	Csa_1G682630	A0A0A0LSI4	A0A0A0M0E8	Uncharacterized protein.	Uncharacterized protein.	0.960
Csa_1G144280	Csa_2G036090	A0A0A0LSI4	A0A0A0LGN2	Uncharacterized protein.	Uncharacterized protein.	0.998
Csa_1G144280	Csa_2G270830	A0A0A0LSI4	A0A0A0LJ81	Uncharacterized protein.	Uncharacterized protein.	0.997
Csa_1G144280	Csa_3G055970	A0A0A0LSI4	A0A0A0L647	Uncharacterized protein.	Uncharacterized protein.	0.978
Csa_1G144280	Csa_3G134680	A0A0A0LSI4	A0A0A0L6Z6	Uncharacterized protein.	Uncharacterized protein.	0.990
Csa_1G144280	Csa_6G319790	A0A0A0LSI4	A0A0A0KD37	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.975