STRINGSTRING
Csa_7G206940 Csa_7G206940 Csa_7G390140 Csa_7G390140 Csa_6G088040 Csa_6G088040 Csa_6G502610 Csa_6G502610 Csa_6G452700 Csa_6G452700 Csa_5G162020 Csa_5G162020 Csa_6G526300 Csa_6G526300 Csa_5G172900 Csa_5G172900 Csa_4G000610 Csa_4G000610 Csa_4G046730 Csa_4G046730 Csa_4G623900 Csa_4G623900 Csa_4G644700 Csa_4G644700 Csa_4G658560 Csa_4G658560 Csa_3G851900 Csa_3G851900 Csa_2G099460 Csa_2G099460 Csa_1G418790 Csa_1G418790 Csa_1G460000 Csa_1G460000
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Csa_7G206940Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
Csa_7G390140U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (197 aa)
Csa_6G088040Uncharacterized protein. (831 aa)
Csa_6G502610RRM domain-containing protein. (505 aa)
Csa_6G452700Small nuclear ribonucleoprotein G. (80 aa)
Csa_5G162020Uncharacterized protein. (420 aa)
Csa_6G526300Small nuclear ribonucleoprotein-associated protein. (284 aa)
Csa_5G172900Uncharacterized protein. (347 aa)
Csa_4G000610Uncharacterized protein. (1004 aa)
Csa_4G046730Small nuclear ribonucleoprotein Sm D2. (188 aa)
Csa_4G623900Sm domain-containing protein. (61 aa)
Csa_4G644700Uncharacterized protein. (985 aa)
Csa_4G658560Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Csa_3G851900Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
Csa_2G099460Uncharacterized protein. (335 aa)
Csa_1G418790Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
Csa_1G460000Uncharacterized protein. (924 aa)
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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