(72 nodes) Positive regulation of gene expression network (Cucumis sativus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_6G004620	Uncharacterized protein. (395 aa)
	Csa_6G104100	Uncharacterized protein. (1023 aa)
	Csa_6G408170	Epimerase domain-containing protein. (409 aa)
	Csa_6G052810	Uncharacterized protein. (161 aa)
	Csa_6G505830	Uncharacterized protein. (340 aa)
	Csa_6G501920	Uncharacterized protein. (229 aa)
	Csa_6G501910	Uncharacterized protein. (139 aa)
	Csa_5G266830	Tr-type G domain-containing protein. (464 aa)
	Csa_6G507340	RRM domain-containing protein. (244 aa)
	Csa_5G308780	Uncharacterized protein. (96 aa)
	Csa_5G453700	Mago-bind domain-containing protein. (122 aa)
	Csa_5G471090	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (1105 aa)
	Csa_5G564790	Uncharacterized protein. (967 aa)
	Csa_5G312340	Uncharacterized protein. (176 aa)
	Csa_5G593310	Cold-inducible RNA binding protein. (89 aa)
	Csa_5G453710	Uncharacterized protein. (100 aa)
	Csa_5G489320	Uncharacterized protein. (444 aa)
	Csa_5G604980	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (197 aa)
	Csa_5G650630	Smg4_UPF3 domain-containing protein. (513 aa)
	Csa_4G015700	Eukaryotic translation initiation factor 3 subunit H; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (337 aa)
	Csa_5G606480	Eukaryotic translation initiation factor 5A. (159 aa)
	Csa_4G037620	Uncharacterized protein. (338 aa)
	Csa_5G565790	Uncharacterized protein. (523 aa)
	Csa_5G622570	Uncharacterized protein. (248 aa)
	Csa_5G635420	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (766 aa)
	Csa_4G192150	Uncharacterized protein. (374 aa)
	Csa_5G643990	RPOL4c domain-containing protein. (121 aa)
	Csa_5G646750	NAC domain-containing protein. (364 aa)
	Csa_4G417490	ABC transporter domain-containing protein. (381 aa)
	Csa_4G437010	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (375 aa)
	Csa_4G500330	Epimerase domain-containing protein. (383 aa)
	Csa_4G047920	ARID domain-containing protein. (639 aa)
	Csa_4G437520	Tr-type G domain-containing protein. (283 aa)
	Csa_3G006660	PHD domain-containing protein. (664 aa)
	Csa_3G130900	HTH myb-type domain-containing protein. (307 aa)
	Csa_4G651970	Eukaryotic translation initiation factor 5A. (159 aa)
	Csa_3G171110	Uncharacterized protein. (103 aa)
	Csa_3G121790	ARID domain-containing protein. (537 aa)
	Csa_3G509940	DUF4210 domain-containing protein. (753 aa)
	Csa_3G172960	Uncharacterized protein. (379 aa)
	Csa_3G516480	Uncharacterized protein. (158 aa)
	Csa_3G595200	PPR_long domain-containing protein. (715 aa)
	Rps4	30S ribosomal protein S4, chloroplastic. (81 aa)
	Csa_2G068690	DSHCT domain-containing protein. (79 aa)
	Csa_2G030050	Uncharacterized protein. (902 aa)
	Csa_2G068685	Helicase C-terminal domain-containing protein. (153 aa)
	Csa_2G258850	PPR_long domain-containing protein. (1102 aa)
	Csa_1G004270	JmjC domain-containing protein. (454 aa)
	Csa_2G382670	Eukaryotic translation initiation factor 5A. (160 aa)
	Csa_2G299360	TMF_TATA_bd domain-containing protein. (1016 aa)
	Csa_2G324460	Uncharacterized protein. (283 aa)
	Csa_1G000770	NAC domain-containing protein. (387 aa)
	Csa_1G007860	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (483 aa)
	Csa_1G256200	Eukaryotic translation initiation factor 5A. (160 aa)
	Csa_1G173140	Smr domain-containing protein. (704 aa)
	Csa_1G050050	Uncharacterized protein. (1546 aa)
	Csa_1G528490	RRM domain-containing protein. (367 aa)
	Csa_1G423040	Uncharacterized protein. (85 aa)
	Csa_2G059820	Uncharacterized protein. (844 aa)
	Csa_2G068682	Helicase ATP-binding domain-containing protein. (372 aa)
	Csa_2G431120	Uncharacterized protein. (726 aa)
	Csa_7G066320	Mago-bind domain-containing protein. (230 aa)
	Csa_7G273640	NAC domain-containing protein. (308 aa)
	Csa_7G071530	Uncharacterized protein. (865 aa)
	Csa_7G375800	Uncharacterized protein. (1298 aa)
	Csa_7G396430	CS domain-containing protein. (208 aa)
	Csa_6G014650	RPOL4c domain-containing protein. (138 aa)
	Csa_7G201830	PPR_long domain-containing protein. (966 aa)
	Csa_7G272130	Uncharacterized protein. (922 aa)
	Csa_6G053320	Uncharacterized protein. (530 aa)
	Csa_6G091910	Uncharacterized protein. (1251 aa)
	Csa_6G076730	Uncharacterized protein. (750 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G000770	Csa_2G068682	A0A0A0LR52	A0A0A0LMI8	NAC domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.937
Csa_1G000770	Csa_2G068685	A0A0A0LR52	A0A0A0LKD4	NAC domain-containing protein.	Helicase C-terminal domain-containing protein.	0.937
Csa_1G000770	Csa_2G068690	A0A0A0LR52	A0A0A0LHE5	NAC domain-containing protein.	DSHCT domain-containing protein.	0.937
Csa_1G000770	Csa_5G471090	A0A0A0LR52	A0A0A0KNF5	NAC domain-containing protein.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.	0.404
Csa_1G000770	Csa_5G604980	A0A0A0LR52	A0A0A0KSN1	NAC domain-containing protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.845
Csa_1G000770	Csa_6G053320	A0A0A0LR52	A0A0A0K9H0	NAC domain-containing protein.	Uncharacterized protein.	0.781
Csa_1G000770	Csa_7G375800	A0A0A0LR52	A0A0A0K5G4	NAC domain-containing protein.	Uncharacterized protein.	0.419
Csa_1G000770	Rps4	A0A0A0LR52	A0A0A0LH94	NAC domain-containing protein.	30S ribosomal protein S4, chloroplastic.	0.845
Csa_1G256200	Csa_5G266830	A0A0A0LTB3	A0A0A0KMB1	Eukaryotic translation initiation factor 5A.	Tr-type G domain-containing protein.	0.493
Csa_1G256200	Csa_5G604980	A0A0A0LTB3	A0A0A0KSN1	Eukaryotic translation initiation factor 5A.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.848
Csa_1G256200	Csa_6G053320	A0A0A0LTB3	A0A0A0K9H0	Eukaryotic translation initiation factor 5A.	Uncharacterized protein.	0.419
Csa_1G256200	Rps4	A0A0A0LTB3	A0A0A0LH94	Eukaryotic translation initiation factor 5A.	30S ribosomal protein S4, chloroplastic.	0.848
Csa_2G068682	Csa_1G000770	A0A0A0LMI8	A0A0A0LR52	Helicase ATP-binding domain-containing protein.	NAC domain-containing protein.	0.937
Csa_2G068682	Csa_2G068685	A0A0A0LMI8	A0A0A0LKD4	Helicase ATP-binding domain-containing protein.	Helicase C-terminal domain-containing protein.	0.951
Csa_2G068682	Csa_3G171110	A0A0A0LMI8	A0A0A0L5Z8	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.502
Csa_2G068682	Csa_5G604980	A0A0A0LMI8	A0A0A0KSN1	Helicase ATP-binding domain-containing protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.640
Csa_2G068682	Csa_5G650630	A0A0A0LMI8	A0A0A0KSY5	Helicase ATP-binding domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.638
Csa_2G068682	Csa_6G053320	A0A0A0LMI8	A0A0A0K9H0	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.573
Csa_2G068682	Csa_6G104100	A0A0A0LMI8	A0A0A0KDS6	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.502
Csa_2G068682	Csa_7G375800	A0A0A0LMI8	A0A0A0K5G4	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.631