(127 nodes) rRNA binding network (Cucumis sativus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_6G517420	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (353 aa)
	Csa_1G605610	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (329 aa)
	Csa_1G570220	Brix domain-containing protein. (138 aa)
	Csa_1G095030	RIBOSOMAL_L9 domain-containing protein. (198 aa)
	Csa_1G423320	Uncharacterized protein. (710 aa)
	Rpl16	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (121 aa)
	Csa_1G530120	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (320 aa)
	Csa_1G570210	Brix domain-containing protein. (129 aa)
	Csa_1G470310	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (182 aa)
	Csa_1G448960	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (118 aa)
	Rps12	30S ribosomal protein S12-B. (87 aa)
	Csa_2G382430	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (159 aa)
	Csa_2G171870	Ribosomal protein L17; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	Csa_2G401350	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (166 aa)
	Csa_2G295950	Ribosomal_TL5_C domain-containing protein. (258 aa)
	Csa_2G025690	Ribosomal_L2_C domain-containing protein. (78 aa)
	Csa_3G894500	Uncharacterized protein. (106 aa)
	Rps4	30S ribosomal protein S4, chloroplastic. (81 aa)
	Csa_3G814330	Brix domain-containing protein. (332 aa)
	Csa_3G777590	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (150 aa)
	Csa_7G219210	Uncharacterized protein. (140 aa)
	Csa_7G044200	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (233 aa)
	Csa_7G274150	Uncharacterized protein. (103 aa)
	Csa_7G281390	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
	Csa_7G291700	Dead box ATP-dependent RNA helicase. (370 aa)
	Csa_7G282410	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
	Csa_7G025720	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (159 aa)
	Csa_6G000680	Uncharacterized protein. (496 aa)
	Csa_7G420870	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (360 aa)
	Csa_7G428960	Uncharacterized protein. (265 aa)
	Csa_7G446890	Ribosomal protein L37; Binds to the 23S rRNA. (95 aa)
	Csa_7G446990	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family. (164 aa)
	Csa_6G078530	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (294 aa)
	Csa_6G044000	G domain-containing protein. (648 aa)
	Csa_6G147610	Uncharacterized protein. (104 aa)
	Csa_6G088070	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (125 aa)
	Csa_6G185280	Uncharacterized protein. (93 aa)
	Csa_6G324870	Uncharacterized protein. (318 aa)
	Csa_6G135990	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (125 aa)
	Csa_6G408240	Uncharacterized protein. (258 aa)
	Csa_6G408780	Uncharacterized protein. (786 aa)
	Csa_6G042360	Uncharacterized protein. (126 aa)
	Csa_6G408170	Epimerase domain-containing protein. (409 aa)
	Csa_6G077430	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	Csa_6G445170	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (166 aa)
	Csa_6G185270	Uncharacterized protein. (209 aa)
	Csa_6G187950	PPIase cyclophilin-type domain-containing protein. (442 aa)
	Csa_6G365730	Ribosomal_L18_c domain-containing protein. (301 aa)
	Csa_6G109760	Uncharacterized protein. (994 aa)
	Csa_6G408230	Uncharacterized protein. (255 aa)
	Csa_6G408280	Uncharacterized protein. (99 aa)
	Csa_6G239160	Uncharacterized protein. (1375 aa)
	Csa_6G519510	Uncharacterized protein. (155 aa)
	Csa_6G364110	Uncharacterized protein. (84 aa)
	Csa_6G524020	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (252 aa)
	Csa_6G502670	Ribosomal_L6 domain-containing protein; Belongs to the universal ribosomal protein uL6 family. (102 aa)
	Csa_5G139920	Uncharacterized protein. (194 aa)
	Csa_5G148810	Uncharacterized protein. (210 aa)
	Csa_3G822380	Ribosomal_TL5_C domain-containing protein. (260 aa)
	Csa_3G821550	Uncharacterized protein. (307 aa)
	Csa_3G731900	Uncharacterized protein. (84 aa)
	Csa_3G854240	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (204 aa)
	Csa_3G848810	RNase III domain-containing protein. (245 aa)
	Csa_3G859720	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (134 aa)
	Csa_3G687730	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (356 aa)
	Csa_3G183980	Uncharacterized protein. (319 aa)
	Csa_3G739040	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (166 aa)
	Csa_3G171140	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (328 aa)
	Csa_3G750370	Brix domain-containing protein. (322 aa)
	Csa_3G238230	RIBOSOMAL_L9 domain-containing protein. (288 aa)
	Csa_3G727930	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (210 aa)
	Csa_3G171790	Uncharacterized protein. (170 aa)
	Csa_3G483790	Ribosomal protein L37; Binds to the 23S rRNA. (95 aa)
	Csa_3G127780	Uncharacterized protein. (186 aa)
	rps7	30S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. (155 aa)
	Csa_3G011820	Smr domain-containing protein. (710 aa)
	Csa_3G127210	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (182 aa)
	Csa_3G098540	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (191 aa)
	Csa_3G035890	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	Csa_4G419580	Uncharacterized protein. (153 aa)
	Csa_3G121660	Uncharacterized protein. (244 aa)
	Csa_3G073850	Uncharacterized protein. (153 aa)
	Csa_3G017220	Uncharacterized protein. (221 aa)
	Rps3	30S ribosomal protein S3, chloroplastic; Belongs to the universal ribosomal protein uS3 family. (74 aa)
	Csa_4G437000	Uncharacterized protein. (114 aa)
	Csa_4G630000	Uncharacterized protein. (184 aa)
	Csa_4G126420	S4 RNA-binding domain-containing protein. (183 aa)
	Csa_4G500330	Epimerase domain-containing protein. (383 aa)
	Csa_4G344090	Uncharacterized protein. (219 aa)
	Csa_4G007080	Uncharacterized protein. (220 aa)
	Csa_4G279840	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (155 aa)
	Csa_4G046570	Era-type G domain-containing protein. (495 aa)
	Csa_4G001790	Brix domain-containing protein. (344 aa)
	Csa_4G124900	Uncharacterized protein. (195 aa)
	Csa_4G107470	Uncharacterized protein. (277 aa)
	Csa_5G623900	Uncharacterized protein. (402 aa)
	Csa_5G466330	Uncharacterized protein. (237 aa)
	Csa_4G007040	Uncharacterized protein. (424 aa)
	Csa_5G604980	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (197 aa)
	Csa_5G638320	Uncharacterized protein. (334 aa)
	Csa_5G180850	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (212 aa)
	Csa_5G488780	Uncharacterized protein. (203 aa)
	RPL5	Ribosomal_L18_c domain-containing protein. (302 aa)
	Csa_5G453690	Brix domain-containing protein. (236 aa)
	Csa_5G264270	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (152 aa)
	Csa_5G488800	Uncharacterized protein. (461 aa)
	Csa_5G605190	Uncharacterized protein. (180 aa)
	Csa_5G212590	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
	Csa_5G146890	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (279 aa)
	Csa_5G453170	Uncharacterized protein. (208 aa)
	Csa_5G218800	Uncharacterized protein. (359 aa)
	Csa_5G212600	RS4NT domain-containing protein. (61 aa)
	Csa_5G524810	Ribosomal protein L2. (111 aa)
	Csa_5G505240	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (153 aa)
	Csa_6G519680	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (181 aa)
	Csa_5G381830	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (167 aa)
	Csa_5G381850	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (148 aa)
	Csa_5G158550	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	Csa_5G308780	Uncharacterized protein. (96 aa)
	Csa_5G321430	Ribosomal_S7 domain-containing protein. (148 aa)
	Csa_5G218790	Uncharacterized protein. (188 aa)
	CSP0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (320 aa)
	Csa_5G180325	Uncharacterized protein. (259 aa)
	Csa_5G114610	Uncharacterized protein. (122 aa)
	Csa_5G176000	Uncharacterized protein. (235 aa)
	Csa_6G526380	Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (430 aa)
	Csa_5G154850	S1 motif domain-containing protein. (755 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSP0	Csa_1G095030	A0A0A0KM27	A0A0A0LXN8	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	RIBOSOMAL_L9 domain-containing protein.	0.878
CSP0	Csa_1G448960	A0A0A0KM27	A0A0A0LUH7	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.916
CSP0	Csa_1G470310	A0A0A0KM27	A0A0A0LUL5	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.960
CSP0	Csa_1G530120	A0A0A0KM27	A0A0A0LV50	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.901
CSP0	Csa_1G570210	A0A0A0KM27	A0A0A0M1K6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Brix domain-containing protein.	0.783
CSP0	Csa_1G570220	A0A0A0KM27	A0A0A0LZ31	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Brix domain-containing protein.	0.783
CSP0	Csa_1G605610	A0A0A0KM27	A0A0A0LZY0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.785
CSP0	Csa_2G025690	A0A0A0KM27	A0A0A0LIR6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal_L2_C domain-containing protein.	0.825
CSP0	Csa_2G171870	A0A0A0KM27	A0A0A0LNL7	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal protein L17; Belongs to the universal ribosomal protein uL14 family.	0.928
CSP0	Csa_2G295950	A0A0A0KM27	A0A0A0LJM8	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal_TL5_C domain-containing protein.	0.955
CSP0	Csa_2G382430	A0A0A0KM27	A0A0A0LPP1	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.953
CSP0	Csa_2G401350	A0A0A0KM27	A0A0A0LME7	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.891
CSP0	Csa_3G017220	A0A0A0KM27	A0A0A0L237	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.881
CSP0	Csa_3G035890	A0A0A0KM27	A0A0A0L5N6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.905
CSP0	Csa_3G073850	A0A0A0KM27	A0A0A0L2X6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.955
CSP0	Csa_3G098540	A0A0A0KM27	A0A0A0L6H1	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.911
CSP0	Csa_3G121660	A0A0A0KM27	A0A0A0L3D6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.850
CSP0	Csa_3G127210	A0A0A0KM27	A0A0A0L6K1	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.960
CSP0	Csa_3G171140	A0A0A0KM27	A0A0A0LAV0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.863
CSP0	Csa_3G238230	A0A0A0KM27	A0A0A0LAH8	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	RIBOSOMAL_L9 domain-containing protein.	0.878