(41 nodes) Positive regulation of mRNA catabolic process network (Cucumis sativus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_1G168920	Uncharacterized protein. (277 aa)
	Csa_1G599420	YTH domain-containing protein. (674 aa)
	Csa_1G320370	Uncharacterized protein. (740 aa)
	Csa_1G004330	Uncharacterized protein. (286 aa)
	Csa_2G382590	Ccr4-associated factor. (274 aa)
	Csa_1G000770	NAC domain-containing protein. (387 aa)
	Csa_2G277030	NOT2_3_5 domain-containing protein. (476 aa)
	Csa_2G270190	Uncharacterized protein. (300 aa)
	Csa_1G004950	KH_dom_type_1 domain-containing protein. (243 aa)
	Csa_2G382610	Uncharacterized protein. (274 aa)
	Csa_3G843850	Uncharacterized protein. (896 aa)
	Csa_3G640540	PUM-HD domain-containing protein. (1003 aa)
	Csa_3G797590	Uncharacterized protein. (583 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
	Csa_3G117930	Uncharacterized protein. (2349 aa)
	Csa_3G039340	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1483 aa)
	Csa_4G165870	RNase_PH domain-containing protein. (265 aa)
	Csa_4G604530	Uncharacterized protein. (808 aa)
	Csa_4G508480	Carbon catabolite repressor protein. (603 aa)
	Csa_4G165890	RNase_PH_C domain-containing protein. (132 aa)
	Csa_5G643990	RPOL4c domain-containing protein. (121 aa)
	Csa_5G622860	Nudix hydrolase domain-containing protein. (314 aa)
	Csa_4G165880	Uncharacterized protein. (55 aa)
	Csa_4G062390	Uncharacterized protein. (808 aa)
	Csa_4G011090	Uncharacterized protein. (262 aa)
	Csa_5G266840	Sm domain-containing protein. (92 aa)
	Csa_5G312340	Uncharacterized protein. (176 aa)
	Csa_6G453810	Uncharacterized protein. (368 aa)
	Csa_6G425790	Uncharacterized protein. (265 aa)
	Csa_6G405350	Nudix hydrolase domain-containing protein. (370 aa)
	Csa_6G302150	NOT2_3_5 domain-containing protein. (659 aa)
	Csa_6G040560	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1125 aa)
	Csa_6G076730	Uncharacterized protein. (750 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	Csa_7G428250	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	Csa_6G014650	RPOL4c domain-containing protein. (138 aa)
	Csa_6G000140	YTH domain-containing protein. (647 aa)
	Csa_1G650130	YTH domain-containing protein. (601 aa)
	Csa_1G615210	Uncharacterized protein. (452 aa)
	Csa_1G537600	Uncharacterized protein. (1019 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G000770	Csa_1G004330	A0A0A0LR52	A0A0A0LU91	NAC domain-containing protein.	Uncharacterized protein.	0.998
Csa_1G000770	Csa_1G004950	A0A0A0LR52	A0A0A0LP58	NAC domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.997
Csa_1G000770	Csa_1G615210	A0A0A0LR52	A0A0A0M072	NAC domain-containing protein.	Uncharacterized protein.	0.996
Csa_1G000770	Csa_4G165870	A0A0A0LR52	A0A0A0KZP2	NAC domain-containing protein.	RNase_PH domain-containing protein.	0.973
Csa_1G000770	Csa_4G165880	A0A0A0LR52	A0A0A0KWB3	NAC domain-containing protein.	Uncharacterized protein.	0.960
Csa_1G000770	Csa_4G165890	A0A0A0LR52	A0A0A0KYC2	NAC domain-containing protein.	RNase_PH_C domain-containing protein.	0.973
Csa_1G000770	Csa_5G622860	A0A0A0LR52	A0A0A0KWT4	NAC domain-containing protein.	Nudix hydrolase domain-containing protein.	0.790
Csa_1G000770	Csa_6G040560	A0A0A0LR52	A0A0A0KC80	NAC domain-containing protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.941
Csa_1G000770	Csa_6G405350	A0A0A0LR52	A0A0A0KHG2	NAC domain-containing protein.	Nudix hydrolase domain-containing protein.	0.790
Csa_1G000770	Csa_6G453810	A0A0A0LR52	A0A0A0KIR2	NAC domain-containing protein.	Uncharacterized protein.	0.847
Csa_1G004330	Csa_1G000770	A0A0A0LU91	A0A0A0LR52	Uncharacterized protein.	NAC domain-containing protein.	0.998
Csa_1G004330	Csa_1G004950	A0A0A0LU91	A0A0A0LP58	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.998
Csa_1G004330	Csa_1G615210	A0A0A0LU91	A0A0A0M072	Uncharacterized protein.	Uncharacterized protein.	0.998
Csa_1G004330	Csa_2G277030	A0A0A0LU91	A0A0A0LPS7	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.774
Csa_1G004330	Csa_4G165870	A0A0A0LU91	A0A0A0KZP2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.984
Csa_1G004330	Csa_4G165880	A0A0A0LU91	A0A0A0KWB3	Uncharacterized protein.	Uncharacterized protein.	0.965
Csa_1G004330	Csa_4G165890	A0A0A0LU91	A0A0A0KYC2	Uncharacterized protein.	RNase_PH_C domain-containing protein.	0.983
Csa_1G004330	Csa_5G622860	A0A0A0LU91	A0A0A0KWT4	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.821
Csa_1G004330	Csa_6G040560	A0A0A0LU91	A0A0A0KC80	Uncharacterized protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.969
Csa_1G004330	Csa_6G302150	A0A0A0LU91	A0A0A0KG20	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.774