12 items (Cucumis sativus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_1G043260	Uncharacterized protein. (194 aa)
	Csa_1G144280	Uncharacterized protein. (532 aa)
	Csa_1G266150	Uncharacterized protein. (783 aa)
	Csa_1G588540	Uncharacterized protein. (624 aa)
	Csa_1G560720	G-patch domain-containing protein. (299 aa)
	Csa_7G431430	Uncharacterized protein. (303 aa)
	Csa_6G517050	TPR_REGION domain-containing protein. (913 aa)
	Csa_5G033990	Uncharacterized protein. (595 aa)
	Csa_5G033980	Uncharacterized protein. (244 aa)
	Csa_5G608300	Uncharacterized protein. (313 aa)
	Csa_2G270830	Uncharacterized protein. (315 aa)
	Csa_2G431100	G-patch domain-containing protein. (871 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G043260	Csa_1G144280	A0A0A0LR08	A0A0A0LSI4	Uncharacterized protein.	Uncharacterized protein.	0.975
Csa_1G043260	Csa_1G266150	A0A0A0LR08	A0A0A0LTU7	Uncharacterized protein.	Uncharacterized protein.	0.410
Csa_1G043260	Csa_1G560720	A0A0A0LR08	A0A0A0LW54	Uncharacterized protein.	G-patch domain-containing protein.	0.410
Csa_1G043260	Csa_1G588540	A0A0A0LR08	A0A0A0M1Z0	Uncharacterized protein.	Uncharacterized protein.	0.575
Csa_1G043260	Csa_2G270830	A0A0A0LR08	A0A0A0LJ81	Uncharacterized protein.	Uncharacterized protein.	0.934
Csa_1G043260	Csa_2G431100	A0A0A0LR08	A0A0A0LN57	Uncharacterized protein.	G-patch domain-containing protein.	0.717
Csa_1G043260	Csa_5G033980	A0A0A0LR08	A0A0A0KPI6	Uncharacterized protein.	Uncharacterized protein.	0.547
Csa_1G043260	Csa_5G033990	A0A0A0LR08	A0A0A0KMK6	Uncharacterized protein.	Uncharacterized protein.	0.783
Csa_1G043260	Csa_5G608300	A0A0A0LR08	A0A0A0KUF0	Uncharacterized protein.	Uncharacterized protein.	0.540
Csa_1G043260	Csa_6G517050	A0A0A0LR08	A0A0A0KLE6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.691
Csa_1G043260	Csa_7G431430	A0A0A0LR08	A0A0A0KBN6	Uncharacterized protein.	Uncharacterized protein.	0.744
Csa_1G144280	Csa_1G043260	A0A0A0LSI4	A0A0A0LR08	Uncharacterized protein.	Uncharacterized protein.	0.975
Csa_1G144280	Csa_1G266150	A0A0A0LSI4	A0A0A0LTU7	Uncharacterized protein.	Uncharacterized protein.	0.837
Csa_1G144280	Csa_1G560720	A0A0A0LSI4	A0A0A0LW54	Uncharacterized protein.	G-patch domain-containing protein.	0.837
Csa_1G144280	Csa_1G588540	A0A0A0LSI4	A0A0A0M1Z0	Uncharacterized protein.	Uncharacterized protein.	0.675
Csa_1G144280	Csa_2G270830	A0A0A0LSI4	A0A0A0LJ81	Uncharacterized protein.	Uncharacterized protein.	0.997
Csa_1G144280	Csa_2G431100	A0A0A0LSI4	A0A0A0LN57	Uncharacterized protein.	G-patch domain-containing protein.	0.922
Csa_1G144280	Csa_5G033980	A0A0A0LSI4	A0A0A0KPI6	Uncharacterized protein.	Uncharacterized protein.	0.813
Csa_1G144280	Csa_5G033990	A0A0A0LSI4	A0A0A0KMK6	Uncharacterized protein.	Uncharacterized protein.	0.910
Csa_1G144280	Csa_5G608300	A0A0A0LSI4	A0A0A0KUF0	Uncharacterized protein.	Uncharacterized protein.	0.546