(13 nodes) CCR4-NOT core complex network (Cucumis sativus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_2G382590	Ccr4-associated factor. (274 aa)
	Csa_7G041980	Uncharacterized protein. (305 aa)
	Csa_7G214190	Uncharacterized protein. (319 aa)
	Csa_6G302150	NOT2_3_5 domain-containing protein. (659 aa)
	Csa_6G425790	Uncharacterized protein. (265 aa)
	Csa_4G011090	Uncharacterized protein. (262 aa)
	Csa_3G117930	Uncharacterized protein. (2349 aa)
	Csa_3G843850	Uncharacterized protein. (896 aa)
	Csa_2G010130	F-box domain-containing protein. (464 aa)
	Csa_2G382610	Uncharacterized protein. (274 aa)
	Csa_2G270190	Uncharacterized protein. (300 aa)
	Csa_2G277030	NOT2_3_5 domain-containing protein. (476 aa)
	Csa_1G168920	Uncharacterized protein. (277 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G168920	Csa_2G270190	A0A0A0LYC8	A0A0A0LPP0	Uncharacterized protein.	Uncharacterized protein.	0.595
Csa_1G168920	Csa_2G277030	A0A0A0LYC8	A0A0A0LPS7	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.888
Csa_1G168920	Csa_2G382590	A0A0A0LYC8	A0A0A0LSM4	Uncharacterized protein.	Ccr4-associated factor.	0.553
Csa_1G168920	Csa_2G382610	A0A0A0LYC8	A0A0A0LMH2	Uncharacterized protein.	Uncharacterized protein.	0.553
Csa_1G168920	Csa_3G117930	A0A0A0LYC8	A0A0A0L3M1	Uncharacterized protein.	Uncharacterized protein.	0.945
Csa_1G168920	Csa_3G843850	A0A0A0LYC8	A0A0A0LI87	Uncharacterized protein.	Uncharacterized protein.	0.939
Csa_1G168920	Csa_4G011090	A0A0A0LYC8	A0A0A0KTU4	Uncharacterized protein.	Uncharacterized protein.	0.589
Csa_1G168920	Csa_6G302150	A0A0A0LYC8	A0A0A0KG20	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.888
Csa_1G168920	Csa_6G425790	A0A0A0LYC8	A0A0A0KI60	Uncharacterized protein.	Uncharacterized protein.	0.548
Csa_1G168920	Csa_7G041980	A0A0A0LYC8	A0A0A0K3J1	Uncharacterized protein.	Uncharacterized protein.	0.896
Csa_1G168920	Csa_7G214190	A0A0A0LYC8	A0A0A0K791	Uncharacterized protein.	Uncharacterized protein.	0.896
Csa_2G010130	Csa_2G277030	A0A0A0LJ78	A0A0A0LPS7	F-box domain-containing protein.	NOT2_3_5 domain-containing protein.	0.767
Csa_2G010130	Csa_3G117930	A0A0A0LJ78	A0A0A0L3M1	F-box domain-containing protein.	Uncharacterized protein.	0.886
Csa_2G010130	Csa_3G843850	A0A0A0LJ78	A0A0A0LI87	F-box domain-containing protein.	Uncharacterized protein.	0.874
Csa_2G010130	Csa_6G302150	A0A0A0LJ78	A0A0A0KG20	F-box domain-containing protein.	NOT2_3_5 domain-containing protein.	0.767
Csa_2G010130	Csa_7G041980	A0A0A0LJ78	A0A0A0K3J1	F-box domain-containing protein.	Uncharacterized protein.	0.784
Csa_2G010130	Csa_7G214190	A0A0A0LJ78	A0A0A0K791	F-box domain-containing protein.	Uncharacterized protein.	0.784
Csa_2G270190	Csa_1G168920	A0A0A0LPP0	A0A0A0LYC8	Uncharacterized protein.	Uncharacterized protein.	0.595
Csa_2G270190	Csa_2G277030	A0A0A0LPP0	A0A0A0LPS7	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.888
Csa_2G270190	Csa_2G382590	A0A0A0LPP0	A0A0A0LSM4	Uncharacterized protein.	Ccr4-associated factor.	0.588