(62 nodes) Ribonuclease H-like superfamily network (Cucumis sativus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_1G229510	BED-type domain-containing protein. (751 aa)
	Csa_3G129680	3'-5' exonuclease domain-containing protein. (314 aa)
	Csa_3G171120	Uncharacterized protein. (900 aa)
	Csa_3G036470	Uncharacterized protein. (787 aa)
	Csa_3G238160	3'-5' exonuclease domain-containing protein. (524 aa)
	Csa_3G078000	POLAc domain-containing protein. (1011 aa)
	Csa_3G048430	Uncharacterized protein. (700 aa)
	Csa_4G628930	Exonuclease domain-containing protein. (325 aa)
	Csa_3G144740	Uncharacterized protein; Belongs to the argonaute family. (984 aa)
	Csa_3G116900	YqgFc domain-containing protein. (235 aa)
	Csa_3G035860	BED-type domain-containing protein. (673 aa)
	Csa_4G624400	BED-type domain-containing protein. (871 aa)
	Csa_4G269720	Uncharacterized protein. (915 aa)
	Csa_4G628920	Exonuclease domain-containing protein. (263 aa)
	Csa_4G279830	Exonuclease domain-containing protein. (253 aa)
	Csa_4G188930	HRDC domain-containing protein. (936 aa)
	Csa_4G338960	Exonuclease domain-containing protein. (243 aa)
	Csa_5G630790	Exonuclease domain-containing protein. (197 aa)
	Csa_5G489310	RNase H domain-containing protein. (373 aa)
	Csa_4G015800	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (297 aa)
	Csa_4G011090	Uncharacterized protein. (262 aa)
	Csa_4G006420	BED-type domain-containing protein. (692 aa)
	Csa_5G606440	Uncharacterized protein; Belongs to the argonaute family. (1019 aa)
	Csa_5G139690	Uncharacterized protein. (624 aa)
	Csa_5G169620	Uncharacterized protein. (817 aa)
	Csa_5G158480	Uncharacterized protein. (787 aa)
	Csa_5G153680	YqgFc domain-containing protein. (169 aa)
	Csa_6G491630	Exonuclease domain-containing protein. (524 aa)
	Csa_6G421650	Uncharacterized protein. (904 aa)
	Csa_6G500610	Exonuclease domain-containing protein. (269 aa)
	Csa_6G476130	DNA polymerase. (1079 aa)
	Csa_6G425790	Uncharacterized protein. (265 aa)
	Csa_6G397190	Exonuclease domain-containing protein. (137 aa)
	Csa_6G151740	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (988 aa)
	Csa_6G423350	BED-type domain-containing protein. (681 aa)
	Csa_6G290800	RBR-type E3 ubiquitin transferase. (562 aa)
	Csa_6G399780	Exonuclease domain-containing protein. (414 aa)
	Csa_6G008670	BED-type domain-containing protein. (814 aa)
	Csa_7G432440	MPN domain-containing protein. (2347 aa)
	Csa_6G052040	Dimer_Tnp_hAT domain-containing protein. (324 aa)
	Csa_7G235230	DUF4413 domain-containing protein. (127 aa)
	Csa_7G043600	HRDC domain-containing protein. (884 aa)
	Csa_3G819870	3'-5' exonuclease domain-containing protein. (209 aa)
	Csa_3G819840	3'-5' exonuclease domain-containing protein. (211 aa)
	Csa_2G030010	DNA polymerase. (1972 aa)
	Csa_2G034510	BED-type domain-containing protein. (698 aa)
	Csa_3G819830	3'-5' exonuclease domain-containing protein. (210 aa)
	Csa_3G829210	RNase H domain-containing protein. (255 aa)
	Csa_2G008020	BED-type domain-containing protein. (677 aa)
	Csa_2G075460	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1625 aa)
	Csa_2G382610	Uncharacterized protein. (274 aa)
	Csa_2G352390	Uncharacterized protein. (340 aa)
	Csa_2G270190	Uncharacterized protein. (300 aa)
	Csa_2G278160	DNA polymerase. (1547 aa)
	Csa_1G009910	Exonuclease domain-containing protein. (505 aa)
	Csa_1G031900	Eukaryotic translation initiation factor 2c; Belongs to the argonaute family. (1058 aa)
	Csa_2G382590	Ccr4-associated factor. (274 aa)
	Csa_1G071820	RNase H domain-containing protein. (205 aa)
	Csa_1G569080	Exonuclease domain-containing protein. (327 aa)
	Csa_1G561980	3'-5' exonuclease domain-containing protein. (580 aa)
	Csa_1G408710	Piwi domain-containing protein. (504 aa)
	Csa_1G168920	Uncharacterized protein. (277 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G168920	Csa_2G270190	A0A0A0LYC8	A0A0A0LPP0	Uncharacterized protein.	Uncharacterized protein.	0.595
Csa_1G168920	Csa_2G382590	A0A0A0LYC8	A0A0A0LSM4	Uncharacterized protein.	Ccr4-associated factor.	0.553
Csa_1G168920	Csa_2G382610	A0A0A0LYC8	A0A0A0LMH2	Uncharacterized protein.	Uncharacterized protein.	0.553
Csa_1G168920	Csa_4G011090	A0A0A0LYC8	A0A0A0KTU4	Uncharacterized protein.	Uncharacterized protein.	0.589
Csa_1G168920	Csa_6G425790	A0A0A0LYC8	A0A0A0KI60	Uncharacterized protein.	Uncharacterized protein.	0.548
Csa_1G229510	Csa_3G171120	A0A0A0LYS2	A0A0A0L859	BED-type domain-containing protein.	Uncharacterized protein.	0.477
Csa_1G229510	Csa_5G139690	A0A0A0LYS2	A0A0A0KQ93	BED-type domain-containing protein.	Uncharacterized protein.	0.498
Csa_1G229510	Csa_6G008670	A0A0A0LYS2	A0A0A0KD75	BED-type domain-containing protein.	BED-type domain-containing protein.	0.530
Csa_2G008020	Csa_3G171120	A0A0A0LI47	A0A0A0L859	BED-type domain-containing protein.	Uncharacterized protein.	0.467
Csa_2G008020	Csa_5G139690	A0A0A0LI47	A0A0A0KQ93	BED-type domain-containing protein.	Uncharacterized protein.	0.485
Csa_2G008020	Csa_6G008670	A0A0A0LI47	A0A0A0KD75	BED-type domain-containing protein.	BED-type domain-containing protein.	0.533
Csa_2G030010	Csa_2G278160	A0A0A0LFW0	A0A0A0LPU1	DNA polymerase.	DNA polymerase.	0.766
Csa_2G030010	Csa_3G078000	A0A0A0LFW0	A0A0A0L6C2	DNA polymerase.	POLAc domain-containing protein.	0.472
Csa_2G030010	Csa_4G015800	A0A0A0LFW0	A0A0A0KTZ4	DNA polymerase.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.484
Csa_2G030010	Csa_6G151740	A0A0A0LFW0	A0A0A0KEV5	DNA polymerase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.849
Csa_2G030010	Csa_6G476130	A0A0A0LFW0	A0A0A0KIW2	DNA polymerase.	DNA polymerase.	0.939
Csa_2G034510	Csa_3G171120	A0A0A0LGZ3	A0A0A0L859	BED-type domain-containing protein.	Uncharacterized protein.	0.485
Csa_2G034510	Csa_5G139690	A0A0A0LGZ3	A0A0A0KQ93	BED-type domain-containing protein.	Uncharacterized protein.	0.440
Csa_2G075460	Csa_4G188930	A0A0A0LKK6	A0A0A0KYK9	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	HRDC domain-containing protein.	0.430
Csa_2G075460	Csa_7G043600	A0A0A0LKK6	A0A0A0K254	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	HRDC domain-containing protein.	0.430