(11 nodes) RNA-binding S4 domain superfamily network (Cucumis sativus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

Your Input:
	Csa_5G604980	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (197 aa)
	Csa_2G346580	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (432 aa)
	Csa_4G025150	Tyrosine--tRNA ligase. (493 aa)
	Csa_4G126420	S4 RNA-binding domain-containing protein. (183 aa)
	Csa_3G233470	S4 RNA-binding domain-containing protein. (319 aa)
	Rps4	30S ribosomal protein S4, chloroplastic. (81 aa)
	Csa_5G212590	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
	Csa_5G212600	RS4NT domain-containing protein. (61 aa)
	Csa_7G368230	S4 RNA-binding domain-containing protein. (296 aa)
	Csa_7G282410	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
	Csa_7G281390	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_4G025150	Csa_4G126420	A0A0A0KU70	A0A0A0KZG3	Tyrosine--tRNA ligase.	S4 RNA-binding domain-containing protein.	0.471
Csa_4G025150	Csa_5G604980	A0A0A0KU70	A0A0A0KSN1	Tyrosine--tRNA ligase.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.471
Csa_4G025150	Rps4	A0A0A0KU70	A0A0A0LH94	Tyrosine--tRNA ligase.	30S ribosomal protein S4, chloroplastic.	0.471
Csa_4G126420	Csa_4G025150	A0A0A0KZG3	A0A0A0KU70	S4 RNA-binding domain-containing protein.	Tyrosine--tRNA ligase.	0.471
Csa_4G126420	Csa_5G212590	A0A0A0KZG3	A0A0A0KQK7	S4 RNA-binding domain-containing protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.910
Csa_4G126420	Csa_5G212600	A0A0A0KZG3	A0A0A0KP69	S4 RNA-binding domain-containing protein.	RS4NT domain-containing protein.	0.910
Csa_4G126420	Csa_5G604980	A0A0A0KZG3	A0A0A0KSN1	S4 RNA-binding domain-containing protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.955
Csa_4G126420	Csa_7G281390	A0A0A0KZG3	A0A0A0K3Y8	S4 RNA-binding domain-containing protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.910
Csa_4G126420	Csa_7G282410	A0A0A0KZG3	A0A0A0K4K7	S4 RNA-binding domain-containing protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.910
Csa_4G126420	Rps4	A0A0A0KZG3	A0A0A0LH94	S4 RNA-binding domain-containing protein.	30S ribosomal protein S4, chloroplastic.	0.955
Csa_5G212590	Csa_4G126420	A0A0A0KQK7	A0A0A0KZG3	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	S4 RNA-binding domain-containing protein.	0.910
Csa_5G212590	Csa_5G604980	A0A0A0KQK7	A0A0A0KSN1	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.971
Csa_5G212590	Csa_7G281390	A0A0A0KQK7	A0A0A0K3Y8	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.900
Csa_5G212590	Csa_7G282410	A0A0A0KQK7	A0A0A0K4K7	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.900
Csa_5G212590	Rps4	A0A0A0KQK7	A0A0A0LH94	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	30S ribosomal protein S4, chloroplastic.	0.908
Csa_5G212600	Csa_4G126420	A0A0A0KP69	A0A0A0KZG3	RS4NT domain-containing protein.	S4 RNA-binding domain-containing protein.	0.910
Csa_5G212600	Csa_5G604980	A0A0A0KP69	A0A0A0KSN1	RS4NT domain-containing protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.941
Csa_5G212600	Rps4	A0A0A0KP69	A0A0A0LH94	RS4NT domain-containing protein.	30S ribosomal protein S4, chloroplastic.	0.908
Csa_5G604980	Csa_4G025150	A0A0A0KSN1	A0A0A0KU70	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	Tyrosine--tRNA ligase.	0.471
Csa_5G604980	Csa_4G126420	A0A0A0KSN1	A0A0A0KZG3	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	S4 RNA-binding domain-containing protein.	0.955