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Csa_7G206940 Csa_7G206940 LSM3 LSM3 LSM4 LSM4 Csa_7G428250 Csa_7G428250 LSM1 LSM1 Csa_6G452700 Csa_6G452700 Csa_6G526300 Csa_6G526300 Csa_5G577410 Csa_5G577410 Csa_5G266840 Csa_5G266840 Csa_5G608250 Csa_5G608250 Csa_4G046730 Csa_4G046730 Csa_4G623900 Csa_4G623900 LSM4-2 LSM4-2 Csa_4G658560 Csa_4G658560 LSM5 LSM5 Csa_3G851900 Csa_3G851900 Csa_3G697950 Csa_3G697950 Csa_1G025880 Csa_1G025880 LSM8 LSM8 Csa_1G418790 Csa_1G418790
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Csa_7G206940Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (149 aa)
Csa_7G428250Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
Csa_6G452700Small nuclear ribonucleoprotein G. (80 aa)
Csa_6G526300Small nuclear ribonucleoprotein-associated protein. (284 aa)
Csa_5G577410Uncharacterized protein. (600 aa)
Csa_5G266840Sm domain-containing protein. (92 aa)
Csa_5G608250Uncharacterized protein. (589 aa)
Csa_4G046730Small nuclear ribonucleoprotein Sm D2. (188 aa)
Csa_4G623900Sm domain-containing protein. (61 aa)
LSM4-2U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (244 aa)
Csa_4G658560Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
Csa_3G851900Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
Csa_3G697950Sm domain-containing protein. (99 aa)
Csa_1G025880Sm domain-containing protein. (112 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
Csa_1G418790Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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