29 items (Cucumis sativus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_1G109350	CID domain-containing protein. (1007 aa)
	Csa_1G616300	MIF4G domain-containing protein. (864 aa)
	Csa_1G268310	Uncharacterized protein. (785 aa)
	Csa_1G268330	Fip1 domain-containing protein. (520 aa)
	Csa_1G039850	WD_REPEATS_REGION domain-containing protein. (437 aa)
	Csa_1G418790	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	Csa_1G042640	Uncharacterized protein. (748 aa)
	Csa_2G373380	Poly(A) polymerase beta. (761 aa)
	Csa_2G074280	CPSF_A domain-containing protein. (1452 aa)
	Csa_3G893440	Symplekin_C domain-containing protein. (1038 aa)
	Csa_3G750380	Uncharacterized protein. (1084 aa)
	Csa_3G893430	DUF3453 domain-containing protein. (243 aa)
	Csa_3G182220	Cleavage and polyadenylation specificity factor subunit 2. (738 aa)
	Csa_3G122550	Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. (200 aa)
	Csa_4G658560	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	Csa_3G038080	TPX2_importin domain-containing protein. (500 aa)
	Csa_4G623900	Sm domain-containing protein. (61 aa)
	Csa_4G594420	TPR_REGION domain-containing protein. (697 aa)
	Csa_4G310200	Uncharacterized protein. (1377 aa)
	Csa_4G129020	Nuclear cap-binding protein subunit 2. (257 aa)
	Csa_5G587170	Uncharacterized protein. (682 aa)
	Csa_5G635390	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (438 aa)
	Csa_5G587200	CPSF73-100_C domain-containing protein. (138 aa)
	Csa_5G587210	Uncharacterized protein. (546 aa)
	Csa_6G452700	Small nuclear ribonucleoprotein G. (80 aa)
	Csa_6G052670	RRM domain-containing protein. (527 aa)
	Csa_7G452330	Uncharacterized protein. (761 aa)
	Csa_7G229900	TPX2_importin domain-containing protein. (315 aa)
	Csa_7G206940	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G039850	Csa_1G042640	A0A0A0LVN0	A0A0A0LQF9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.749
Csa_1G039850	Csa_1G109350	A0A0A0LVN0	A0A0A0LVG0	WD_REPEATS_REGION domain-containing protein.	CID domain-containing protein.	0.924
Csa_1G039850	Csa_1G268310	A0A0A0LVN0	A0A0A0LWL9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.861
Csa_1G039850	Csa_1G268330	A0A0A0LVN0	A0A0A0LW72	WD_REPEATS_REGION domain-containing protein.	Fip1 domain-containing protein.	0.861
Csa_1G039850	Csa_1G616300	A0A0A0LVN0	A0A0A0M082	WD_REPEATS_REGION domain-containing protein.	MIF4G domain-containing protein.	0.830
Csa_1G039850	Csa_2G074280	A0A0A0LVN0	A0A0A0LKI9	WD_REPEATS_REGION domain-containing protein.	CPSF_A domain-containing protein.	0.831
Csa_1G039850	Csa_2G373380	A0A0A0LVN0	A0A0A0LP30	WD_REPEATS_REGION domain-containing protein.	Poly(A) polymerase beta.	0.737
Csa_1G039850	Csa_3G038080	A0A0A0LVN0	A0A0A0L4G6	WD_REPEATS_REGION domain-containing protein.	TPX2_importin domain-containing protein.	0.775
Csa_1G039850	Csa_3G122550	A0A0A0LVN0	A0A0A0L8Y2	WD_REPEATS_REGION domain-containing protein.	Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing.	0.948
Csa_1G039850	Csa_3G182220	A0A0A0LVN0	A0A0A0LBF9	WD_REPEATS_REGION domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.997
Csa_1G039850	Csa_3G750380	A0A0A0LVN0	A0A0A0LGI0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.924
Csa_1G039850	Csa_3G893430	A0A0A0LVN0	A0A0A0LES8	WD_REPEATS_REGION domain-containing protein.	DUF3453 domain-containing protein.	0.767
Csa_1G039850	Csa_3G893440	A0A0A0LVN0	A0A0A0LGZ1	WD_REPEATS_REGION domain-containing protein.	Symplekin_C domain-containing protein.	0.767
Csa_1G039850	Csa_4G129020	A0A0A0LVN0	A0A0A0KVX7	WD_REPEATS_REGION domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.780
Csa_1G039850	Csa_4G310200	A0A0A0LVN0	A0A0A0KXZ6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.816
Csa_1G039850	Csa_4G594420	A0A0A0LVN0	A0A0A0KZK4	WD_REPEATS_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.998
Csa_1G039850	Csa_5G587170	A0A0A0LVN0	A0A0A0KV82	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.935
Csa_1G039850	Csa_5G587200	A0A0A0LVN0	A0A0A0KRY5	WD_REPEATS_REGION domain-containing protein.	CPSF73-100_C domain-containing protein.	0.864
Csa_1G039850	Csa_5G587210	A0A0A0LVN0	A0A0A0KPU1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.935
Csa_1G039850	Csa_5G635390	A0A0A0LVN0	A0A0A0KU52	WD_REPEATS_REGION domain-containing protein.	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.	0.902