13 items (Cucumis sativus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_2G070310	Uncharacterized protein; Belongs to the heat shock protein 70 family. (650 aa)
	Csa_2G033940	Calreticulin. (420 aa)
	Csa_3G822260	Methionine synthase. (765 aa)
	Csa_3G806800	Actin 3. (377 aa)
	Csa_4G295440	Heat shock protein 70; Belongs to the heat shock protein 70 family. (647 aa)
	Csa_4G296190	TOG domain-containing protein. (397 aa)
	Csa_5G512930	Heat shock protein 70; Belongs to the heat shock protein 70 family. (652 aa)
	Csa_4G009350	Calreticulin. (431 aa)
	Csa_2G301530	Actin. (377 aa)
	Csa_6G089250	Fes1 domain-containing protein. (395 aa)
	Csa_7G039780	O-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (313 aa)
	Csa_7G419610	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. (393 aa)
	Csa_7G056470	Uncharacterized protein. (377 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_2G033940	Csa_2G301530	A0A0A0LFZ8	A0A0A0KJ21	Calreticulin.	Actin.	0.474
Csa_2G033940	Csa_3G806800	A0A0A0LFZ8	A0A0A0LEF3	Calreticulin.	Actin 3.	0.500
Csa_2G033940	Csa_4G009350	A0A0A0LFZ8	A0A0A0KTX6	Calreticulin.	Calreticulin.	0.903
Csa_2G033940	Csa_4G295440	A0A0A0LFZ8	A0A0A0KXG3	Calreticulin.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.474
Csa_2G033940	Csa_6G089250	A0A0A0LFZ8	A0A0A0KA97	Calreticulin.	Fes1 domain-containing protein.	0.446
Csa_2G033940	Csa_7G056470	A0A0A0LFZ8	A0A0A0K2G0	Calreticulin.	Uncharacterized protein.	0.476
Csa_2G070310	Csa_4G296190	A0A0A0LJF4	A0A0A0KX88	Uncharacterized protein; Belongs to the heat shock protein 70 family.	TOG domain-containing protein.	0.651
Csa_2G070310	Csa_6G089250	A0A0A0LJF4	A0A0A0KA97	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Fes1 domain-containing protein.	0.651
Csa_2G070310	Csa_7G419610	A0A0A0LJF4	A0A0A0K5X0	Uncharacterized protein; Belongs to the heat shock protein 70 family.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.495
Csa_2G301530	Csa_2G033940	A0A0A0KJ21	A0A0A0LFZ8	Actin.	Calreticulin.	0.474
Csa_2G301530	Csa_4G009350	A0A0A0KJ21	A0A0A0KTX6	Actin.	Calreticulin.	0.532
Csa_2G301530	Csa_4G295440	A0A0A0KJ21	A0A0A0KXG3	Actin.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.572
Csa_2G301530	Csa_5G512930	A0A0A0KJ21	A0A0A0KU74	Actin.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.542
Csa_2G301530	Csa_7G419610	A0A0A0KJ21	A0A0A0K5X0	Actin.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.411
Csa_3G806800	Csa_2G033940	A0A0A0LEF3	A0A0A0LFZ8	Actin 3.	Calreticulin.	0.500
Csa_3G806800	Csa_4G009350	A0A0A0LEF3	A0A0A0KTX6	Actin 3.	Calreticulin.	0.534
Csa_3G806800	Csa_4G295440	A0A0A0LEF3	A0A0A0KXG3	Actin 3.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.573
Csa_3G806800	Csa_5G512930	A0A0A0LEF3	A0A0A0KU74	Actin 3.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.543
Csa_3G806800	Csa_7G419610	A0A0A0LEF3	A0A0A0K5X0	Actin 3.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.413
Csa_3G822260	Csa_4G295440	A0A0A0LEZ3	A0A0A0KXG3	Methionine synthase.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.498