26 items (Cucumis sativus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_6G495000	Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. (329 aa)
	Csa_6G160180	ACC oxidase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (314 aa)
	Csa_6G431740	ABC transporter domain-containing protein. (651 aa)
	Csa_6G213910	Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. (325 aa)
	Csa_6G517010	Uncharacterized protein. (143 aa)
	CS-ACS2	Aminotran_1_2 domain-containing protein. (489 aa)
	Csa_4G091870	1-aminocyclopropane-1-carboxylate oxidase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (342 aa)
	Csa_4G099220	Aminotran_1_2 domain-containing protein. (442 aa)
	Csa_4G009900	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity. (305 aa)
	Csa_4G640960	Uncharacterized protein. (454 aa)
	WRKY33	WRKY domain-containing protein. (435 aa)
	Csa_4G411390	Uncharacterized protein. (518 aa)
	Csa_3G271380	Uncharacterized protein. (419 aa)
	Csa_3G219720	Protein kinase domain-containing protein. (655 aa)
	WRKY56	WRKY domain-containing protein. (170 aa)
	Csa_3G845500	Uncharacterized protein. (926 aa)
	WRKY22	WRKY transcription factor. (329 aa)
	Csa_3G782680	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (307 aa)
	Csa_2G069200	Uncharacterized protein. (189 aa)
	Csa_2G070840	Uncharacterized protein. (596 aa)
	Csa_2G353460	ACS11. (440 aa)
	Csa_1G086390	Protein kinase domain-containing protein. (615 aa)
	Csa_1G580750	Aminotran_1_2 domain-containing protein. (445 aa)
	WRKY2	WRKYP2. (576 aa)
	ACS1	1-aminocyclopropane-1-carboxylate synthase. (481 aa)
	pre-peroxidase	Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. (322 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACS1	Csa_4G091870	Q09PK3	A0A0A0KVJ3	1-aminocyclopropane-1-carboxylate synthase.	1-aminocyclopropane-1-carboxylate oxidase; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.637
ACS1	Csa_6G160180	Q09PK3	A0A0A0KGY2	1-aminocyclopropane-1-carboxylate synthase.	ACC oxidase; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.788
ACS1	WRKY33	Q09PK3	A0A0A0L0C5	1-aminocyclopropane-1-carboxylate synthase.	WRKY domain-containing protein.	0.410
CS-ACS2	Csa_4G091870	A0A0A0KUW7	A0A0A0KVJ3	Aminotran_1_2 domain-containing protein.	1-aminocyclopropane-1-carboxylate oxidase; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.549
CS-ACS2	Csa_6G160180	A0A0A0KUW7	A0A0A0KGY2	Aminotran_1_2 domain-containing protein.	ACC oxidase; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.889
Csa_1G086390	Csa_2G069200	A0A0A0LS43	A0A0A0LGX8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.671
Csa_1G086390	Csa_2G070840	A0A0A0LS43	A0A0A0LHG1	Protein kinase domain-containing protein.	Uncharacterized protein.	0.677
Csa_1G086390	Csa_3G271380	A0A0A0LS43	A0A0A0L6Y2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.669
Csa_1G086390	Csa_3G782680	A0A0A0LS43	A0A0A0LGT9	Protein kinase domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.668
Csa_1G086390	Csa_3G845500	A0A0A0LS43	A0A0A0LDA8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.572
Csa_1G086390	Csa_4G009900	A0A0A0LS43	A0A0A0KVV1	Protein kinase domain-containing protein.	Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.	0.669
Csa_1G086390	Csa_4G411390	A0A0A0LS43	A0A0A0L217	Protein kinase domain-containing protein.	Uncharacterized protein.	0.669
Csa_1G086390	Csa_4G640960	A0A0A0LS43	A0A0A0KZT3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.671
Csa_1G086390	Csa_6G213910	A0A0A0LS43	A0A0A0KHH0	Protein kinase domain-containing protein.	Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	0.684
Csa_1G086390	Csa_6G431740	A0A0A0LS43	A0A0A0KH10	Protein kinase domain-containing protein.	ABC transporter domain-containing protein.	0.669
Csa_1G086390	Csa_6G495000	A0A0A0LS43	A0A0A0KFX4	Protein kinase domain-containing protein.	Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	0.564
Csa_1G086390	Csa_6G517010	A0A0A0LS43	A0A0A0KI05	Protein kinase domain-containing protein.	Uncharacterized protein.	0.668
Csa_1G086390	WRKY56	A0A0A0LS43	A0A0A0LB34	Protein kinase domain-containing protein.	WRKY domain-containing protein.	0.441
Csa_1G086390	pre-peroxidase	A0A0A0LS43	Q40559	Protein kinase domain-containing protein.	Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	0.678
Csa_1G580750	Csa_4G091870	A0A0A0M1V3	A0A0A0KVJ3	Aminotran_1_2 domain-containing protein.	1-aminocyclopropane-1-carboxylate oxidase; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.640