12 items (Cucumis sativus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_1G144280	Uncharacterized protein. (532 aa)
	Csa_1G460000	Uncharacterized protein. (924 aa)
	Csa_1G043050	Uncharacterized protein. (1164 aa)
	Csa_6G513630	Uncharacterized protein. (651 aa)
	Csa_6G517050	TPR_REGION domain-containing protein. (913 aa)
	Csa_5G528420	Uncharacterized protein. (213 aa)
	Csa_5G528410	Uncharacterized protein. (547 aa)
	Csa_4G594420	TPR_REGION domain-containing protein. (697 aa)
	Csa_4G553660	Uncharacterized protein. (1922 aa)
	Csa_6G104100	Uncharacterized protein. (1023 aa)
	Csa_6G088040	Uncharacterized protein. (831 aa)
	Csa_3G166320	TPR_REGION domain-containing protein. (636 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G043050	Csa_1G144280	A0A0A0LVY4	A0A0A0LSI4	Uncharacterized protein.	Uncharacterized protein.	0.533
Csa_1G144280	Csa_1G043050	A0A0A0LSI4	A0A0A0LVY4	Uncharacterized protein.	Uncharacterized protein.	0.533
Csa_1G144280	Csa_6G104100	A0A0A0LSI4	A0A0A0KDS6	Uncharacterized protein.	Uncharacterized protein.	0.444
Csa_1G144280	Csa_6G517050	A0A0A0LSI4	A0A0A0KLE6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.999
Csa_1G460000	Csa_5G528410	A0A0A0LUZ9	A0A0A0KR84	Uncharacterized protein.	Uncharacterized protein.	0.607
Csa_1G460000	Csa_6G088040	A0A0A0LUZ9	A0A0A0KF31	Uncharacterized protein.	Uncharacterized protein.	0.580
Csa_4G553660	Csa_6G513630	A0A0A0L3Z5	A0A0A0KJV9	Uncharacterized protein.	Uncharacterized protein.	0.992
Csa_5G528410	Csa_1G460000	A0A0A0KR84	A0A0A0LUZ9	Uncharacterized protein.	Uncharacterized protein.	0.607
Csa_5G528410	Csa_5G528420	A0A0A0KR84	A0A0A0KP58	Uncharacterized protein.	Uncharacterized protein.	0.764
Csa_5G528410	Csa_6G088040	A0A0A0KR84	A0A0A0KF31	Uncharacterized protein.	Uncharacterized protein.	0.607
Csa_5G528410	Csa_6G104100	A0A0A0KR84	A0A0A0KDS6	Uncharacterized protein.	Uncharacterized protein.	0.435
Csa_5G528420	Csa_5G528410	A0A0A0KP58	A0A0A0KR84	Uncharacterized protein.	Uncharacterized protein.	0.764
Csa_5G528420	Csa_6G104100	A0A0A0KP58	A0A0A0KDS6	Uncharacterized protein.	Uncharacterized protein.	0.435
Csa_6G088040	Csa_1G460000	A0A0A0KF31	A0A0A0LUZ9	Uncharacterized protein.	Uncharacterized protein.	0.580
Csa_6G088040	Csa_5G528410	A0A0A0KF31	A0A0A0KR84	Uncharacterized protein.	Uncharacterized protein.	0.607
Csa_6G104100	Csa_1G144280	A0A0A0KDS6	A0A0A0LSI4	Uncharacterized protein.	Uncharacterized protein.	0.444
Csa_6G104100	Csa_5G528410	A0A0A0KDS6	A0A0A0KR84	Uncharacterized protein.	Uncharacterized protein.	0.435
Csa_6G104100	Csa_5G528420	A0A0A0KDS6	A0A0A0KP58	Uncharacterized protein.	Uncharacterized protein.	0.435
Csa_6G104100	Csa_6G517050	A0A0A0KDS6	A0A0A0KLE6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.645
Csa_6G513630	Csa_4G553660	A0A0A0KJV9	A0A0A0L3Z5	Uncharacterized protein.	Uncharacterized protein.	0.992