(81 nodes) RNA degradation network (Cucumis sativus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_7G041980	Uncharacterized protein. (305 aa)
	Csa_7G073530	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (649 aa)
	Csa_7G451310	Uncharacterized protein; Belongs to the chaperonin (HSP60) family. (570 aa)
	Csa_7G214190	Uncharacterized protein. (319 aa)
	Csa_7G074840	Uncharacterized protein; Belongs to the RNR ribonuclease family. (935 aa)
	Csa_7G332900	Uncharacterized protein; Belongs to the chaperonin (HSP60) family. (572 aa)
	Csa_7G428960	Uncharacterized protein. (265 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (149 aa)
	Csa_7G428250	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	Csa_6G296980	Uncharacterized protein. (1169 aa)
	Csa_6G190290	Uncharacterized protein. (178 aa)
	Csa_6G401360	CRM domain-containing protein. (500 aa)
	Csa_6G052760	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (626 aa)
	Csa_6G146430	Uncharacterized protein. (258 aa)
	Csa_6G109760	Uncharacterized protein. (994 aa)
	Csa_6G302150	NOT2_3_5 domain-containing protein. (659 aa)
	Csa_6G405350	Nudix hydrolase domain-containing protein. (370 aa)
	Csa_6G425790	Uncharacterized protein. (265 aa)
	Csa_6G450370	Uncharacterized protein. (444 aa)
	Csa_6G453810	Uncharacterized protein. (368 aa)
	PFK	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (454 aa)
	Csa_5G175730	Uncharacterized protein. (241 aa)
	Csa_5G266840	Sm domain-containing protein. (92 aa)
	Csa_5G612290	Uncharacterized protein. (1144 aa)
	Csa_4G011090	Uncharacterized protein. (262 aa)
	Csa_4G062390	Uncharacterized protein. (808 aa)
	Csa_5G607990	Uncharacterized protein; Belongs to the chaperonin (HSP60) family. (619 aa)
	Csa_4G188670	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (530 aa)
	Csa_5G611030	Uncharacterized protein. (1172 aa)
	Csa_5G622860	Nudix hydrolase domain-containing protein. (314 aa)
	Csa_4G188930	HRDC domain-containing protein. (936 aa)
	Csa_4G508480	Carbon catabolite repressor protein. (603 aa)
	PFK-2	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (529 aa)
	Csa_4G604530	Uncharacterized protein. (808 aa)
	Csa_4G165870	RNase_PH domain-containing protein. (265 aa)
	Csa_4G179170	Heat shock protein; Belongs to the heat shock protein 70 family. (680 aa)
	Csa_4G188795	Helicase ATP-binding domain-containing protein. (174 aa)
	Csa_4G063450	Uncharacterized protein. (1228 aa)
	PFK-3	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (532 aa)
	Csa_4G651890	Uncharacterized protein. (211 aa)
	Csa_4G637740	Uncharacterized protein. (544 aa)
	Csa_3G117930	Uncharacterized protein. (2349 aa)
	Csa_3G122520	Dead box ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (558 aa)
	Csa_4G665130	Uncharacterized protein. (1184 aa)
	Csa_3G045180	Uncharacterized protein. (1417 aa)
	Csa_3G048430	Uncharacterized protein. (700 aa)
	PFK-4	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (529 aa)
	PFK-5	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (460 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
	Csa_3G627150	Uncharacterized protein. (196 aa)
	Csa_3G202720	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (654 aa)
	Csa_3G797590	Uncharacterized protein. (583 aa)
	Csa_3G782660	Uncharacterized protein. (1036 aa)
	Csa_3G697950	Sm domain-containing protein. (99 aa)
	Csa_3G746540	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (697 aa)
	Csa_3G838680	S1 motif domain-containing protein. (1032 aa)
	Csa_3G822370	S1 motif domain-containing protein. (922 aa)
	Csa_3G843850	Uncharacterized protein. (896 aa)
	Csa_2G169720	Uncharacterized protein; Belongs to the chaperonin (HSP60) family. (575 aa)
	Csa_2G374620	Uncharacterized protein. (243 aa)
	Csa_2G382610	Uncharacterized protein. (274 aa)
	Csa_2G068682	Helicase ATP-binding domain-containing protein. (372 aa)
	Csa_1G004950	KH_dom_type_1 domain-containing protein. (243 aa)
	Csa_1G014400	Uncharacterized protein. (492 aa)
	Csa_2G270190	Uncharacterized protein. (300 aa)
	Csa_1G024810	Uncharacterized protein. (1215 aa)
	Csa_2G382590	Ccr4-associated factor. (274 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	Csa_1G181360	ABC transporter domain-containing protein. (326 aa)
	Csa_1G004330	Uncharacterized protein. (286 aa)
	Csa_1G528500	Uncharacterized protein. (1349 aa)
	PFK-6	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (492 aa)
	Csa_1G590260	WD_REPEATS_REGION domain-containing protein. (321 aa)
	Csa_1G168920	Uncharacterized protein. (277 aa)
	Csa_1G228970	TPR_REGION domain-containing protein. (777 aa)
	Csa_1G615210	Uncharacterized protein. (452 aa)
	Csa_1G528460	Uncharacterized protein. (483 aa)
	Csa_1G599450	Uncharacterized protein; Belongs to the chaperonin (HSP60) family. (608 aa)
	ABCA19	ABC transporter I family member 19. (306 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCA19	Csa_1G181360	L7Y071	A0A0A0LTD5	ABC transporter I family member 19.	ABC transporter domain-containing protein.	0.909
ABCA19	Csa_3G122520	L7Y071	A0A0A0L495	ABC transporter I family member 19.	Dead box ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.422
ABCA19	Csa_3G843850	L7Y071	A0A0A0LI87	ABC transporter I family member 19.	Uncharacterized protein.	0.474
Csa_1G004330	Csa_1G004950	A0A0A0LU91	A0A0A0LP58	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.998
Csa_1G004330	Csa_1G024810	A0A0A0LU91	A0A0A0LS63	Uncharacterized protein.	Uncharacterized protein.	0.404
Csa_1G004330	Csa_1G528500	A0A0A0LU91	A0A0A0LV33	Uncharacterized protein.	Uncharacterized protein.	0.937
Csa_1G004330	Csa_1G615210	A0A0A0LU91	A0A0A0M072	Uncharacterized protein.	Uncharacterized protein.	0.998
Csa_1G004330	Csa_2G068682	A0A0A0LU91	A0A0A0LMI8	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.939
Csa_1G004330	Csa_2G374620	A0A0A0LU91	A0A0A0LLJ9	Uncharacterized protein.	Uncharacterized protein.	0.999
Csa_1G004330	Csa_3G627150	A0A0A0LU91	A0A0A0L935	Uncharacterized protein.	Uncharacterized protein.	0.999
Csa_1G004330	Csa_3G782660	A0A0A0LU91	A0A0A0LBL1	Uncharacterized protein.	Uncharacterized protein.	0.404
Csa_1G004330	Csa_4G063450	A0A0A0LU91	A0A0A0L085	Uncharacterized protein.	Uncharacterized protein.	0.404
Csa_1G004330	Csa_4G165870	A0A0A0LU91	A0A0A0KZP2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.984
Csa_1G004330	Csa_4G188930	A0A0A0LU91	A0A0A0KYK9	Uncharacterized protein.	HRDC domain-containing protein.	0.991
Csa_1G004330	Csa_4G651890	A0A0A0LU91	A0A0A0L118	Uncharacterized protein.	Uncharacterized protein.	0.996
Csa_1G004330	Csa_4G665130	A0A0A0LU91	A0A0A0L4Q4	Uncharacterized protein.	Uncharacterized protein.	0.902
Csa_1G004330	Csa_5G175730	A0A0A0LU91	A0A0A0KNI9	Uncharacterized protein.	Uncharacterized protein.	0.998
Csa_1G004330	Csa_5G611030	A0A0A0LU91	A0A0A0KWI1	Uncharacterized protein.	Uncharacterized protein.	0.404
Csa_1G004330	Csa_5G612290	A0A0A0LU91	A0A0A0KTB9	Uncharacterized protein.	Uncharacterized protein.	0.404
Csa_1G004330	Csa_5G622860	A0A0A0LU91	A0A0A0KWT4	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.821