(38 nodes) Basal transcription factors network (Cucumis sativus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_7G037630	TAF domain-containing protein. (544 aa)
	Csa_7G390040	Helicase ATP-binding domain-containing protein. (758 aa)
	Csa_7G450520	TFIID_20kDa domain-containing protein. (680 aa)
	Csa_7G357030	Uncharacterized protein. (1899 aa)
	Csa_7G449470	Uncharacterized protein. (179 aa)
	Csa_7G407540	Uncharacterized protein. (135 aa)
	Csa_6G188660	Uncharacterized protein. (536 aa)
	Csa_6G418910	TAF domain-containing protein. (543 aa)
	Csa_6G452070	TFIID_20kDa domain-containing protein. (511 aa)
	Csa_6G446430	BTP domain-containing protein. (360 aa)
	Csa_6G490020	CYCLIN domain-containing protein; Belongs to the cyclin family. (332 aa)
	Csa_6G517270	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)
	Csa_5G152930	Uncharacterized protein. (821 aa)
	Csa_6G502590	Uncharacterized protein. (443 aa)
	Csa_5G169080	General transcription factor IIH subunit. (423 aa)
	Csa_5G492360	TFIIF_beta domain-containing protein. (190 aa)
	Csa_5G517200	TAFII55_N domain-containing protein. (296 aa)
	Csa_5G639490	BTP domain-containing protein. (376 aa)
	Csa_4G049080	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (277 aa)
	Csa_4G415910	TFIIB-type domain-containing protein. (312 aa)
	Csa_4G652030	Uncharacterized protein. (674 aa)
	Csa_4G338420	BSD domain-containing protein. (388 aa)
	Csa_3G064190	TAF domain-containing protein. (535 aa)
	Csa_3G036500	Uncharacterized protein. (70 aa)
	Csa_3G038160	TAFII28 domain-containing protein. (220 aa)
	Csa_3G624050	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (538 aa)
	Csa_3G740170	BTP domain-containing protein. (370 aa)
	Csa_3G903480	Uncharacterized protein. (895 aa)
	Csa_2G401990	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
	Csa_2G072450	Uncharacterized protein. (295 aa)
	Csa_1G024870	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (418 aa)
	Csa_2G383360	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (136 aa)
	Csa_2G401490	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
	Csa_1G042170	Peptidase_M1 domain-containing protein. (1362 aa)
	Csa_2G363560	Uncharacterized protein. (260 aa)
	Csa_1G020880	HTH TFE/IIEalpha-type domain-containing protein. (476 aa)
	Csa_1G257900	MAT1 domain-containing protein. (189 aa)
	Csa_1G599390	Uncharacterized protein. (200 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G020880	Csa_1G024870	A0A0A0LSL9	A0A0A0LPN4	HTH TFE/IIEalpha-type domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.992
Csa_1G020880	Csa_1G042170	A0A0A0LSL9	A0A0A0LQC8	HTH TFE/IIEalpha-type domain-containing protein.	Peptidase_M1 domain-containing protein.	0.930
Csa_1G020880	Csa_1G257900	A0A0A0LSL9	A0A0A0LW26	HTH TFE/IIEalpha-type domain-containing protein.	MAT1 domain-containing protein.	0.949
Csa_1G020880	Csa_1G599390	A0A0A0LSL9	A0A0A0LWT4	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.993
Csa_1G020880	Csa_2G072450	A0A0A0LSL9	A0A0A0LMM2	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.993
Csa_1G020880	Csa_2G363560	A0A0A0LSL9	A0A0A0LRL0	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.956
Csa_1G020880	Csa_2G383360	A0A0A0LSL9	A0A0A0LPV6	HTH TFE/IIEalpha-type domain-containing protein.	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	0.904
Csa_1G020880	Csa_2G401490	A0A0A0LSL9	A0A0A0LQ01	HTH TFE/IIEalpha-type domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.972
Csa_1G020880	Csa_2G401990	A0A0A0LSL9	A0A0A0LMF8	HTH TFE/IIEalpha-type domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.972
Csa_1G020880	Csa_3G036500	A0A0A0LSL9	A0A0A0L4F5	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.986
Csa_1G020880	Csa_3G038160	A0A0A0LSL9	A0A0A0L5S4	HTH TFE/IIEalpha-type domain-containing protein.	TAFII28 domain-containing protein.	0.974
Csa_1G020880	Csa_3G064190	A0A0A0LSL9	A0A0A0L2A3	HTH TFE/IIEalpha-type domain-containing protein.	TAF domain-containing protein.	0.860
Csa_1G020880	Csa_3G624050	A0A0A0LSL9	A0A0A0LCA6	HTH TFE/IIEalpha-type domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.996
Csa_1G020880	Csa_3G740170	A0A0A0LSL9	A0A0A0LDI8	HTH TFE/IIEalpha-type domain-containing protein.	BTP domain-containing protein.	0.754
Csa_1G020880	Csa_3G903480	A0A0A0LSL9	A0A0A0LF46	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.884
Csa_1G020880	Csa_4G049080	A0A0A0LSL9	A0A0A0KWU5	HTH TFE/IIEalpha-type domain-containing protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.998
Csa_1G020880	Csa_4G338420	A0A0A0LSL9	A0A0A0L1N5	HTH TFE/IIEalpha-type domain-containing protein.	BSD domain-containing protein.	0.981
Csa_1G020880	Csa_4G415910	A0A0A0LSL9	A0A0A0KYQ5	HTH TFE/IIEalpha-type domain-containing protein.	TFIIB-type domain-containing protein.	0.980
Csa_1G020880	Csa_4G652030	A0A0A0LSL9	A0A0A0L139	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.914
Csa_1G020880	Csa_5G152930	A0A0A0LSL9	A0A0A0KKI0	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.959