STRINGSTRING
Smed_0092 Smed_0092 Smed_0165 Smed_0165 Smed_0301 Smed_0301 Smed_0302 Smed_0302 Smed_0474 Smed_0474 Smed_0475 Smed_0475 Smed_0717 Smed_0717 Smed_1389 Smed_1389 Smed_1714 Smed_1714 Smed_2126 Smed_2126 Smed_2130 Smed_2130 Smed_2191 Smed_2191 proC proC Smed_2327 Smed_2327 Smed_2405 Smed_2405 Smed_2415 Smed_2415 Smed_2416 Smed_2416 Smed_2578 Smed_2578 Smed_2580 Smed_2580 GltD GltD Smed_2762 Smed_2762 Smed_2849 Smed_2849 Smed_3161 Smed_3161 Smed_3187 Smed_3187
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_0092Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. (1233 aa)
Smed_0165Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sme:SMc02249 putative sensory transduction histidine kinase transmembrane protein. (1168 aa)
Smed_0301PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc00761 putative oxidoreductase protein. (436 aa)
Smed_0302Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: sme:SMc00762 putative glutamine synthetase protein. (478 aa)
Smed_0474PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc00990 putative fosmidomycin resistance antibiotic resistance transmembrane protein. (398 aa)
Smed_0475Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: sme:SMc00994 putative transcription regulator protein. (271 aa)
Smed_0717TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; KEGG: sme:SMc02547 putative proline iminopeptidase protein; Belongs to the peptidase S33 family. (320 aa)
Smed_1389TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sme:SMc00948 glutamine synthetase I protein. (469 aa)
Smed_1714Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: csa:Csal_2087 transcriptional regulator, XRE family with cupin sensor protein. (182 aa)
Smed_2126PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc01576 putative oxidoreductase protein. (429 aa)
Smed_2130PFAM: glutamine synthetase catalytic region; KEGG: sme:SMc01594 probable glutamine synthetase. (454 aa)
Smed_2191PFAM: aldehyde dehydrogenase; KEGG: sme:SMc01656 putative aldehyde dehydrogenase protein; Belongs to the aldehyde dehydrogenase family. (475 aa)
proCPyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. (274 aa)
Smed_2327PFAM: peptidase M19 renal dipeptidase; KEGG: sme:SMc01524 putative dipeptidase protein. (353 aa)
Smed_2405PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sme:SMc01962 hypothetical protein. (258 aa)
Smed_2415PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc01972 putative oxidoreductase protein. (436 aa)
Smed_2416PFAM: glutamine synthetase catalytic region; KEGG: sme:SMc01973 putative homologous to A glutamine synthetase protein. (455 aa)
Smed_2578Aminotransferase class-III; PFAM: aminoglycoside phosphotransferase; peptidase M23B; aminotransferase class-III; KEGG: sme:SMc00677 hypothetical protein. (1018 aa)
Smed_2580Aminotransferase class-III; PFAM: aminoglycoside phosphotransferase; aminotransferase class-III; KEGG: sme:SMc00675 hypothetical protein. (975 aa)
GltDTIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sme:SMc04026 probable glutamate synthase small chain protein. (485 aa)
Smed_2762Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: sme:SMc03943 hypothetical protein. (251 aa)
Smed_2849PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc03132 putative oxidoreductase protein. (426 aa)
Smed_3161Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: sme:SMc04387 putative aldehyde dehydrogenase protein. (182 aa)
Smed_3187PFAM: NAD-glutamate dehydrogenase; KEGG: sme:SMc04085 hypothetical protein. (1595 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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