STRINGSTRING
Smed_0301 Smed_0301 Smed_0302 Smed_0302 Smed_1389 Smed_1389 Smed_2126 Smed_2126 Smed_2130 Smed_2130 Smed_2191 Smed_2191 Smed_2405 Smed_2405 Smed_2415 Smed_2415 Smed_2416 Smed_2416 GltD GltD Smed_2849 Smed_2849 Smed_3187 Smed_3187
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_0301PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc00761 putative oxidoreductase protein. (436 aa)
Smed_0302Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: sme:SMc00762 putative glutamine synthetase protein. (478 aa)
Smed_1389TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sme:SMc00948 glutamine synthetase I protein. (469 aa)
Smed_2126PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc01576 putative oxidoreductase protein. (429 aa)
Smed_2130PFAM: glutamine synthetase catalytic region; KEGG: sme:SMc01594 probable glutamine synthetase. (454 aa)
Smed_2191PFAM: aldehyde dehydrogenase; KEGG: sme:SMc01656 putative aldehyde dehydrogenase protein; Belongs to the aldehyde dehydrogenase family. (475 aa)
Smed_2405PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sme:SMc01962 hypothetical protein. (258 aa)
Smed_2415PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc01972 putative oxidoreductase protein. (436 aa)
Smed_2416PFAM: glutamine synthetase catalytic region; KEGG: sme:SMc01973 putative homologous to A glutamine synthetase protein. (455 aa)
GltDTIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sme:SMc04026 probable glutamate synthase small chain protein. (485 aa)
Smed_2849PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc03132 putative oxidoreductase protein. (426 aa)
Smed_3187PFAM: NAD-glutamate dehydrogenase; KEGG: sme:SMc04085 hypothetical protein. (1595 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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