STRINGSTRING
Smed_0422 Smed_0422 Smed_0423 Smed_0423 Smed_0820 Smed_0820 nusB nusB Smed_0823 Smed_0823 hppA hppA Smed_2665 Smed_2665
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_0422PFAM: inositol monophosphatase; KEGG: sme:SMc00896 putative sulfite biosynthesis protein. (272 aa)
Smed_0423KEGG: sme:SMc00895 hypothetical protein. (78 aa)
Smed_0820PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMc01775 putative acetyltransferase protein. (180 aa)
nusBNusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (160 aa)
Smed_0823PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc01779 putative transport transmembrane protein. (408 aa)
hppAV-type H(+)-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force. (711 aa)
Smed_2665PFAM: inositol monophosphatase; KEGG: sme:SMc03994 putative myo-inositol-1(or 4)-monophosphatase. (266 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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