STRINGSTRING
Smed_1058 Smed_1058 Smed_3025 Smed_3025 Smed_3026 Smed_3026 Smed_3027 Smed_3027 Smed_3029 Smed_3029
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_1058PFAM: HpcH/HpaI aldolase; KEGG: sme:SMc01014 hypothetical protein. (228 aa)
Smed_3025KEGG: sme:SMc03792 hypothetical protein. (68 aa)
Smed_3026Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: sme:SMc03793 probable citrate lyase beta chain (citrase) (citryl-CoA lyase subunit) protein; Belongs to the HpcH/HpaI aldolase family. (301 aa)
Smed_3027KEGG: sme:SMc03794 hypothetical/unknown transmembrane protein. (84 aa)
Smed_3029PFAM: Endoribonuclease L-PSP; KEGG: sme:SMc03796 hypothetical protein. (126 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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