STRINGSTRING
Smed_0352 Smed_0352 Smed_0353 Smed_0353 Smed_0354 Smed_0354 Smed_0355 Smed_0355 Smed_1280 Smed_1280 Smed_1983 Smed_1983 Smed_2790 Smed_2790 Smed_3511 Smed_3511 Smed_3512 Smed_3512 Smed_3513 Smed_3513
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_0352KEGG: rle:RL3128 putative transmembrane protein. (79 aa)
Smed_0353PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: sme:SMc00803 hypothetical protein. (255 aa)
Smed_0354KEGG: sme:SMc00804 hypothetical protein. (413 aa)
Smed_0355KEGG: sme:SMc00805 hypothetical protein. (214 aa)
Smed_1280PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: sme:SMb21565 hypothetical protein. (253 aa)
Smed_1983PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: sme:SMc01408 hypothetical protein. (235 aa)
Smed_2790KEGG: mlo:mll5035 hypothetical protein. (118 aa)
Smed_3511PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH01077 hypothetical protein. (138 aa)
Smed_3512PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: ret:RHE_CH01078 hypothetical protein. (154 aa)
Smed_3513PFAM: regulatory protein ArsR; KEGG: ret:RHE_CH01079 probable transcriptional regulator protein, ArsR family. (109 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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