STRINGSTRING
Smed_2142 Smed_2142 Smed_2143 Smed_2143 Smed_2144 Smed_2144 Smed_2145 Smed_2145 Smed_2146 Smed_2146
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_2142PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rle:pRL100267 putative ATP-binding component of ABC transporter. (365 aa)
Smed_2143PFAM: protein of unknown function DUF1680; KEGG: rle:pRL100266 hypothetical protein. (648 aa)
Smed_2144PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL100265 putative permease component of ABC transporter. (288 aa)
Smed_2145PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL100264 putative permease component of ABC transporter. (362 aa)
Smed_2146PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL100263 putative substrate-binding component of ABC transporter. (414 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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