STRINGSTRING
Smed_2311 Smed_2311 Smed_2312 Smed_2312 Smed_2313 Smed_2313 Smed_2314 Smed_2314 Smed_2315 Smed_2315
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_2311PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sme:SMb20235 putative sugar ABC transporter ATP-binding protein. (361 aa)
Smed_2312KEGG: sme:SMb20234 hypothetical protein. (398 aa)
Smed_2313PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20233 putative sugar ABC transporter permease protein. (280 aa)
Smed_2314PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20232 putative suagr ABC transporter permease protein. (310 aa)
Smed_2315PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMb20231 putative ABC transporter sugar-binding protein. (455 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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