STRINGSTRING
Smed_0100 Smed_0100 Smed_0101 Smed_0101 Smed_0102 Smed_0102 Smed_0103 Smed_0103 Smed_0104 Smed_0104 FrcK FrcK Smed_0343 Smed_0343 Smed_0344 Smed_0344 Smed_0345 Smed_0345 Smed_0346 Smed_0346 Smed_0914 Smed_0914 Smed_0916 Smed_0916 Smed_2039 Smed_2039 Smed_2040 Smed_2040 Smed_2041 Smed_2041 Smed_2042 Smed_2042 Smed_2043 Smed_2043 Smed_2442 Smed_2442 Smed_2443 Smed_2443 Smed_2444 Smed_2444 Smed_2473 Smed_2473 Smed_2474 Smed_2474 Smed_2475 Smed_2475 Smed_3034 Smed_3034 Smed_3035 Smed_3035 Smed_3036 Smed_3036 Smed_3037 Smed_3037 Smed_3038 Smed_3038 Smed_3039 Smed_3039 Smed_3040 Smed_3040 Smed_3041 Smed_3041 Smed_3042 Smed_3042 Smed_3043 Smed_3043 Smed_3125 Smed_3125 Smed_3126 Smed_3126 Smed_3127 Smed_3127 Smed_3227 Smed_3227 Smed_3228 Smed_3228 Smed_3229 Smed_3229
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_0100PFAM: RbsD or FucU transport; KEGG: sme:SMc02173 fucose operon fucU protein; Belongs to the RbsD / FucU family. (142 aa)
Smed_0101PFAM: ROK family protein; KEGG: sme:SMc02172 putative transcription regulator protein. (409 aa)
Smed_0102PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc02171 putative periplasmic binding ABC transporter protein. (341 aa)
Smed_0103Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02170 putative permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family. (360 aa)
Smed_0104PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02169 putative ATP-binding ABC transporter protein. (260 aa)
FrcKKEGG: sme:SMc02167 hypothetical protein. (206 aa)
Smed_0343PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rxy:Rxyl_2603 twin-arginine translocation pathway signal. (319 aa)
Smed_0344Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: msm:MSMEG_1373 ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components. (347 aa)
Smed_0345PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_2601 ABC transporter related. (271 aa)
Smed_0346TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rha:RHA1_ro08464 probable acetylornithine deacetylase. (447 aa)
Smed_0914Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02019 putative permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family. (336 aa)
Smed_0916KEGG: sme:SMc02021 putative periplasmic binding ABC transporter protein. (340 aa)
Smed_2039PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mll7360 hypothetical protein. (345 aa)
Smed_2040KEGG: mlo:mll4958 hypothetical protein. (358 aa)
Smed_2041KEGG: mlo:mll7366 ABC transporter binding protein. (314 aa)
Smed_2042Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: mlo:mll7365 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (328 aa)
Smed_2043PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll7362 ABC sugar transport ATP binding protein. (255 aa)
Smed_2442Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02031 putative permease protein; Belongs to the binding-protein-dependent transport system permease family. (349 aa)
Smed_2443PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02032 putative ATP-binding ABC transporter protein. (494 aa)
Smed_2444KEGG: sme:SMc02033 putative periplasmic binding protein. (395 aa)
Smed_2473Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02452 putative transport system permease ABC transporter protein. (330 aa)
Smed_2474PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02337 putative ATP-binding ABC transporter protein. (513 aa)
Smed_2475Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc02338 putative periplasmic binding ABC transporter protein. (321 aa)
Smed_3034PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dge:Dgeo_2865 short-chain dehydrogenase/reductase SDR. (256 aa)
Smed_3035PFAM: carbohydrate kinase FGGY; KEGG: pac:PPA2321 sugar kinase, putative xylulose kinase; Belongs to the FGGY kinase family. (502 aa)
Smed_3036Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (111 aa)
Smed_3037PFAM: alpha/beta hydrolase fold; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: vei:Veis_2228 alpha/beta hydrolase fold. (437 aa)
Smed_3038PFAM: Transketolase central region; Transketolase domain protein; KEGG: gsu:GSU2436 dehydrogenase complex, E1 component, beta subunit. (325 aa)
Smed_3039PFAM: dehydrogenase E1 component; KEGG: tte:TTE0186 Thiamine pyrophosphate-dependent dehydrogenases, E1 component alpha subunit. (342 aa)
Smed_3040Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: vfi:VF1446 ribose transport system permease protein RbsC. (348 aa)
Smed_3041PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_02469 ABC-type sugar transport system, ATPase component. (515 aa)
Smed_3042ABC-type sugar transport system periplasmic component-like protein; KEGG: jan:Jann_2406 periplasmic binding protein/LacI transcriptional regulator. (315 aa)
Smed_3043Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: vei:Veis_2010 transcriptional regulator, DeoR family. (325 aa)
Smed_3125PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_C_3484 ribose ABC transporter (ATP-binding protein). (495 aa)
Smed_3126Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: atc:AGR_C_3486 bifunctional carbohydrate binding and transport protein. (310 aa)
Smed_3127Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: atc:AGR_C_3488 bifunctional carbohydrate binding and transport protein; Belongs to the binding-protein-dependent transport system permease family. (324 aa)
Smed_3227PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc02774 putative ABC transporter periplasmic binding protein. (329 aa)
Smed_3228PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02773 putative ABC transporter ATP-binding protein. (517 aa)
Smed_3229Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02772 putative sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (324 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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