STRINGSTRING
Smed_0100 Smed_0100 Smed_0101 Smed_0101 Smed_0102 Smed_0102 Smed_0103 Smed_0103 Smed_0104 Smed_0104 FrcK FrcK Smed_0343 Smed_0343 Smed_0344 Smed_0344 Smed_0345 Smed_0345 Smed_0346 Smed_0346 Smed_0914 Smed_0914 Smed_0916 Smed_0916 Smed_2039 Smed_2039 Smed_2040 Smed_2040 Smed_2041 Smed_2041 Smed_2042 Smed_2042 Smed_2043 Smed_2043 Smed_2442 Smed_2442 Smed_2443 Smed_2443 Smed_2444 Smed_2444 Smed_2473 Smed_2473 Smed_2474 Smed_2474 Smed_2475 Smed_2475 Smed_3042 Smed_3042 Smed_3125 Smed_3125 Smed_3126 Smed_3126 Smed_3127 Smed_3127 Smed_3227 Smed_3227 Smed_3228 Smed_3228 Smed_3229 Smed_3229
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_0100PFAM: RbsD or FucU transport; KEGG: sme:SMc02173 fucose operon fucU protein; Belongs to the RbsD / FucU family. (142 aa)
Smed_0101PFAM: ROK family protein; KEGG: sme:SMc02172 putative transcription regulator protein. (409 aa)
Smed_0102PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc02171 putative periplasmic binding ABC transporter protein. (341 aa)
Smed_0103Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02170 putative permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family. (360 aa)
Smed_0104PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02169 putative ATP-binding ABC transporter protein. (260 aa)
FrcKKEGG: sme:SMc02167 hypothetical protein. (206 aa)
Smed_0343PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rxy:Rxyl_2603 twin-arginine translocation pathway signal. (319 aa)
Smed_0344Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: msm:MSMEG_1373 ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components. (347 aa)
Smed_0345PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_2601 ABC transporter related. (271 aa)
Smed_0346TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rha:RHA1_ro08464 probable acetylornithine deacetylase. (447 aa)
Smed_0914Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02019 putative permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family. (336 aa)
Smed_0916KEGG: sme:SMc02021 putative periplasmic binding ABC transporter protein. (340 aa)
Smed_2039PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mll7360 hypothetical protein. (345 aa)
Smed_2040KEGG: mlo:mll4958 hypothetical protein. (358 aa)
Smed_2041KEGG: mlo:mll7366 ABC transporter binding protein. (314 aa)
Smed_2042Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: mlo:mll7365 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (328 aa)
Smed_2043PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll7362 ABC sugar transport ATP binding protein. (255 aa)
Smed_2442Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02031 putative permease protein; Belongs to the binding-protein-dependent transport system permease family. (349 aa)
Smed_2443PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02032 putative ATP-binding ABC transporter protein. (494 aa)
Smed_2444KEGG: sme:SMc02033 putative periplasmic binding protein. (395 aa)
Smed_2473Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02452 putative transport system permease ABC transporter protein. (330 aa)
Smed_2474PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02337 putative ATP-binding ABC transporter protein. (513 aa)
Smed_2475Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc02338 putative periplasmic binding ABC transporter protein. (321 aa)
Smed_3042ABC-type sugar transport system periplasmic component-like protein; KEGG: jan:Jann_2406 periplasmic binding protein/LacI transcriptional regulator. (315 aa)
Smed_3125PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_C_3484 ribose ABC transporter (ATP-binding protein). (495 aa)
Smed_3126Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: atc:AGR_C_3486 bifunctional carbohydrate binding and transport protein. (310 aa)
Smed_3127Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: atc:AGR_C_3488 bifunctional carbohydrate binding and transport protein; Belongs to the binding-protein-dependent transport system permease family. (324 aa)
Smed_3227PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc02774 putative ABC transporter periplasmic binding protein. (329 aa)
Smed_3228PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02773 putative ABC transporter ATP-binding protein. (517 aa)
Smed_3229Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02772 putative sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (324 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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