STRINGSTRING
Smed_2039 Smed_2039 Smed_2040 Smed_2040 Smed_2041 Smed_2041 Smed_2042 Smed_2042 Smed_2043 Smed_2043
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_2039PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mll7360 hypothetical protein. (345 aa)
Smed_2040KEGG: mlo:mll4958 hypothetical protein. (358 aa)
Smed_2041KEGG: mlo:mll7366 ABC transporter binding protein. (314 aa)
Smed_2042Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: mlo:mll7365 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (328 aa)
Smed_2043PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll7362 ABC sugar transport ATP binding protein. (255 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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