STRINGSTRING
Smed_0135 Smed_0135 Smed_0172 Smed_0172 Smed_0173 Smed_0173 Smed_0174 Smed_0174 Smed_0175 Smed_0175 Smed_0176 Smed_0176 Smed_0378 Smed_0378 Smed_0650 Smed_0650 Smed_0651 Smed_0651 Smed_1105 Smed_1105 Smed_1106 Smed_1106 Smed_1107 Smed_1107 Smed_1108 Smed_1108 Smed_1588 Smed_1588 Smed_1589 Smed_1589 Smed_1590 Smed_1590 Smed_1694 Smed_1694 Smed_1695 Smed_1695 znuC znuC Smed_1697 Smed_1697 Smed_1767 Smed_1767 Smed_1768 Smed_1768 Smed_1959 Smed_1959 Smed_2098 Smed_2098 Smed_2099 Smed_2099 Smed_2100 Smed_2100 Smed_2101 Smed_2101 Smed_2305 Smed_2305 Smed_2306 Smed_2306 Smed_2307 Smed_2307 Smed_2308 Smed_2308 Smed_2309 Smed_2309 Smed_2310 Smed_2310 Smed_2579 Smed_2579 Smed_2581 Smed_2581 Smed_2582 Smed_2582 Smed_2583 Smed_2583 Smed_2584 Smed_2584 Smed_2585 Smed_2585 Smed_2586 Smed_2586 Smed_2587 Smed_2587 Smed_2588 Smed_2588 Smed_2718 Smed_2718 Smed_2846 Smed_2846 Smed_2847 Smed_2847 Smed_2848 Smed_2848 Smed_2850 Smed_2850 fur fur Smed_2914 Smed_2914 Smed_2915 Smed_2915 Smed_2916 Smed_2916 Smed_2917 Smed_2917 Smed_2918 Smed_2918 Smed_2979 Smed_2979 Smed_2980 Smed_2980 Smed_2981 Smed_2981 Smed_3102 Smed_3102 Smed_3103 Smed_3103 Smed_3136 Smed_3136 Smed_3137 Smed_3137 Smed_3138 Smed_3138
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_0135PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMc02219 putative amino acid-binding periplasmic protein. (283 aa)
Smed_0172TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sme:SMc02256 putative hippurate hydrolase protein. (388 aa)
Smed_0173TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02257 putative transport system permease ABC transporter protein. (274 aa)
Smed_0174TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02258 putative transport system permease ABC transporter protein. (241 aa)
Smed_0175PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMc02259 putative periplasmic binding ABC transporter protein. (260 aa)
Smed_0176PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02260 putative ATP-binding ABC transporter protein. (257 aa)
Smed_0378PFAM: beta-lactamase domain protein; KEGG: sme:SMc00814 hypothetical signal peptide protein. (326 aa)
Smed_0650PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sme:SMc02378 putative periplasmic binding transmembrane protein. (332 aa)
Smed_0651PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02379 putative permease protein. (295 aa)
Smed_1105PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02121 probable general L-amino acid transport ATP-binding ABC transporter protein. (258 aa)
Smed_1106TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02120 probable general L-amino acid transport permease ABC transporter protein. (384 aa)
Smed_1107TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02119 probable general L-amino acid transport permease ABC transporter protein. (397 aa)
Smed_1108TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein. (341 aa)
Smed_1588PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: sme:SMc00140 putative amino-acid binding periplasmic protein. (260 aa)
Smed_1589TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00139 putative amino acid transport system permease protein. (267 aa)
Smed_1590TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00138 putative amino acid transport system permease protein. (276 aa)
Smed_1694Putative ferric uptake regulator, Fur family; KEGG: sme:SMc04242 putative zinc uptake regulation protein; Belongs to the Fur family. (132 aa)
Smed_1695PFAM: ABC-3 protein; KEGG: sme:SMc04243 probable high-affinity zinc uptake system membrane ABC transporter protein. (275 aa)
znuCABC transporter related; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. (301 aa)
Smed_1697PFAM: periplasmic solute binding protein; KEGG: sme:SMc04245 probable high-affinity zinc uptake system ABC transporter protein. (347 aa)
Smed_1767PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sme:SMc04311 hypothetical transmembrane protein. (332 aa)
Smed_1768TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc04439 putative glycine betaine transport ATP-binding ABC transporter protein. (348 aa)
Smed_1959PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sme:SMc04341 putative amino acid-binding periplasmic protein. (314 aa)
Smed_2098PFAM: extracellular solute-binding protein family 3; KEGG: bja:bll2909 probable amino acid binding protein; Belongs to the bacterial solute-binding protein 3 family. (343 aa)
Smed_2099PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_05808 ABC-type amino acid transport system, permease component. (402 aa)
Smed_2100TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ana:alr4166 polar amino acid transport system permease protein. (376 aa)
Smed_2101PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_3047 ABC transporter related. (252 aa)
Smed_2305PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sme:SMc02737 putative glycine betaine-binding ABC transporter protein. (318 aa)
Smed_2306PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02738 putative glycine betaine transport system permease ABC transporter protein. (281 aa)
Smed_2307PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02739 putative glycine betaine transport ATP-binding ABC transporter protein. (349 aa)
Smed_2308PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sme:SMc04457 hypothetical protein. (247 aa)
Smed_2309PFAM: regulatory protein ArsR; KEGG: ret:RHE_CH03089 transcriptional regulator protein (repressor of nodulation genes), ArsR family. (114 aa)
Smed_2310KEGG: sme:SMc01535 hypothetical protein. (192 aa)
Smed_2579SMART: extracellular solute-binding protein family 3; KEGG: sme:SMc00676 putative amino acid-binding periplasmic signal peptide protein; Belongs to the bacterial solute-binding protein 3 family. (336 aa)
Smed_2581Transcriptional regulator, GntR family; TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sme:SMc00674 putative histidine utilization repressor transcription regulator protein. (247 aa)
Smed_2582TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; KEGG: sme:SMc00673 putative hydrolase protein. (457 aa)
Smed_2583PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sme:SMc00672 histidine-binding periplasmic signal peptide protein. (344 aa)
Smed_2584PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00671 histidine transport system permease ABC transporter protein. (285 aa)
Smed_2585PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00670 histidine transport ATP-binding ABC transporter protein. (275 aa)
Smed_2586PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sme:SMc00669 putative histidine ammonia-lyase protein. (504 aa)
Smed_2587PFAM: nucleoside recognition domain protein; KEGG: sme:SMc00668 hypothetical, transmembrane protein. (441 aa)
Smed_2588PFAM: protein of unknown function DUF886; KEGG: sme:SMc00667 hypothetical protein. (197 aa)
Smed_2718PFAM: N-formylglutamate amidohydrolase; KEGG: sme:SMc04043 hypothetical protein. (293 aa)
Smed_2846PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc03135 putative amino-acid transport system ATP-binding ABC transporter protein. (251 aa)
Smed_2847PFAM: protein of unknown function DUF6 transmembrane; KEGG: sme:SMc03134 hypothetical protein. (293 aa)
Smed_2848TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03133 putative amino-acid transport system permease ABC transporter protein. (323 aa)
Smed_2850PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMc03131 putative amino acid-binding periplasmic ABC transporter protein. (275 aa)
furFerric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sme:SMc02510 probable ferric uptake regulation protein; Belongs to the Fur family. (142 aa)
Smed_2914PFAM: periplasmic solute binding protein; KEGG: sme:SMc02509 putative iron-binding periplasmic ABC transporter protein; Belongs to the bacterial solute-binding protein 9 family. (301 aa)
Smed_2915PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02508 putative iron transport ATP-binding ABC transporter protein. (311 aa)
Smed_2916ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: sme:SMc02507 putative iron transport system membrane ABC transporter protein. (285 aa)
Smed_2917ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: sme:SMc02506 putative iron transport system membrane ABC transporter protein. (285 aa)
Smed_2918KEGG: sme:SMc02505 hypothetical protein. (281 aa)
Smed_2979PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: mlo:mll5423 unknown protein. (265 aa)
Smed_2980TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5422 ABC transporter permease protein. (223 aa)
Smed_2981PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0795 amino acid ABC transporter, ATP-binding protein. (245 aa)
Smed_3102PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: sme:SMc03864 putative amino acid-binding periplasmic (signal peptide) ABC transporter protein. (269 aa)
Smed_3103TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03865 putative amino-acid transport system permease ABC transporter protein. (274 aa)
Smed_3136PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMc03891 putative amino acid-binding periplasmic ABC transporter protein; Belongs to the bacterial solute-binding protein 3 family. (257 aa)
Smed_3137TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03893 putative amino-acid transport system permease ABC transporter protein. (226 aa)
Smed_3138PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc03894 putative amino-acid ABC transporter ATP-binding protein. (253 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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