STRINGSTRING
Smed_0329 Smed_0329 Smed_0330 Smed_0330 Smed_0331 Smed_0331 Smed_0332 Smed_0332 Smed_0333 Smed_0333 Smed_2436 Smed_2436 Smed_2438 Smed_2438 Smed_2439 Smed_2439 Smed_2440 Smed_2440 Smed_2853 Smed_2853 Smed_2854 Smed_2854 Smed_2855 Smed_2855 Smed_2856 Smed_2856 Smed_2857 Smed_2857 Smed_3302 Smed_3302 Smed_3303 Smed_3303 Smed_3304 Smed_3304 Smed_3305 Smed_3305 Smed_3308 Smed_3308
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_0329PFAM: extracellular solute-binding protein family 5; KEGG: sme:SMc00786 probable periplasmic dipeptide-binding protein. (531 aa)
Smed_0330Nickel-transporting ATPase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00787 probable dipeptide transport system permease protein. (334 aa)
Smed_0331PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00788 probable dipeptide transport system permease protein. (302 aa)
Smed_0332PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00789 probable dipeptide transport ATP-binding ABC transporter protein. (284 aa)
Smed_0333PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: sme:SMc00790 probable dipeptide transport ATP-binding ABC transporter protein. (275 aa)
Smed_2436PFAM: extracellular solute-binding protein family 5; KEGG: sme:SMc02025 putative dipeptide-binding periplasmic protein. (514 aa)
Smed_2438PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: sme:SMc02027 putative dipeptide transport ATP-binding ABC transporter protein; Belongs to the ABC transporter superfamily. (541 aa)
Smed_2439PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02028 putative dipeptide transport system permease ABC transporter protein. (272 aa)
Smed_2440PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02029 putative dipeptide transport system permease ABC transporter protein. (314 aa)
Smed_2853PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03128 putative transport system permease ABC transporter protein. (293 aa)
Smed_2854PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03127 putative transport system permease ABC transporter protein. (308 aa)
Smed_2855TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: sme:SMc03126 putative transport system ATP-binding ABC transporter protein; Belongs to the ABC transporter superfamily. (332 aa)
Smed_2856TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: sme:SMc03125 putative transport system ATP-binding ABC transporter protein; Belongs to the ABC transporter superfamily. (338 aa)
Smed_2857PFAM: extracellular solute-binding protein family 5; KEGG: sme:SMc03124 putative periplasmic binding ABC transporter protein. (542 aa)
Smed_3302TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: ttj:TTHA0473 peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (326 aa)
Smed_3303TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: dge:Dgeo_1341 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; Belongs to the ABC transporter superfamily. (342 aa)
Smed_3304PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1472 putative dipeptide transport permease protein. (333 aa)
Smed_3305PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ecs:ECs2089 putative transport protein. (281 aa)
Smed_3308PFAM: extracellular solute-binding protein family 5; KEGG: ecs:ECs2091 putative hemin-binding lipoprotein. (528 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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