STRINGSTRING
Smed_0310 Smed_0310 potA potA Smed_0312 Smed_0312 Smed_0313 Smed_0313 Smed_0317 Smed_0317 Smed_0327 Smed_0327 Smed_0473 Smed_0473 Smed_0750 Smed_0750 Smed_0751 Smed_0751 Smed_0752 Smed_0752 Smed_0753 Smed_0753 Smed_0754 Smed_0754 Smed_0755 Smed_0755 Smed_0756 Smed_0756 Smed_0757 Smed_0757 Smed_0758 Smed_0758 Smed_1163 Smed_1163 Smed_1715 Smed_1715 potA-2 potA-2 Smed_1717 Smed_1717 Smed_1718 Smed_1718 Smed_1946 Smed_1946 Smed_1947 Smed_1947 Smed_1948 Smed_1948 Smed_2134 Smed_2134 Smed_2135 Smed_2135 Smed_2136 Smed_2136 Smed_2137 Smed_2137 fbpC fbpC Smed_2168 Smed_2168 Smed_2169 Smed_2169 Smed_2170 Smed_2170 Smed_2186 Smed_2186 Smed_2187 Smed_2187 Smed_2188 Smed_2188 Smed_2189 Smed_2189 Smed_2190 Smed_2190 Smed_2406 Smed_2406 Smed_2407 Smed_2407 Smed_2408 Smed_2408 Smed_2409 Smed_2409 Smed_2717 Smed_2717 Smed_3281 Smed_3281 Smed_3284 Smed_3284
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_0310Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (364 aa)
potASpermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (380 aa)
Smed_0312PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00772 probable putrescine transport system permease protein. (303 aa)
Smed_0313Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00773 probable putrescine transport system permease protein. (273 aa)
Smed_0317PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00775 putative iron(III) permease protein. (570 aa)
Smed_0327PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc00784 putative iron binding protein. (346 aa)
Smed_0473PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc00991 putative putrescine-binding periplasmic protein. (345 aa)
Smed_0750PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pfl:PFL_5026 cobalamin synthesis protein/P47K family protein. (320 aa)
Smed_0751PFAM: Amidohydrolase 3; KEGG: pfl:PFL_5025 amidohydrolase family protein. (575 aa)
Smed_0752KEGG: mlo:mll7671 hypothetical protein. (527 aa)
Smed_0753Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mlo:mlr7672 transcriptional regulator. (302 aa)
Smed_0754PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mlo:mlr7674 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (363 aa)
Smed_0755KEGG: mlo:mlr7676 ABC transporter, binding protein. (371 aa)
Smed_0756PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr7677 ABC transporter, permease protein. (277 aa)
Smed_0757PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr7678 ABC transporter, permease protein. (265 aa)
Smed_0758PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: sme:SMc00576 hypothetical protein. (295 aa)
Smed_1163PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02068 putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (372 aa)
Smed_1715PFAM: extracellular solute-binding protein family 1; KEGG: bmb:BruAb2_0855 hypothetical spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein. (346 aa)
potA-2Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (355 aa)
Smed_1717PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BRA0328 spermidine/putrescine ABC transporter, permease protein, putative. (393 aa)
Smed_1718PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa1751 putative ABC transporter, permease protein. (261 aa)
Smed_1946PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc04300 probable ferric iron transport ATP-binding protein. (353 aa)
Smed_1947PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04316 probable ferric iron transport system permease protein. (559 aa)
Smed_1948PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc04317 iron-binding periplasmic protein. (326 aa)
Smed_2134PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc01605 putative periplasmic binding ABC transporter protein. (364 aa)
Smed_2135PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01606 putative permease protein. (293 aa)
Smed_2136PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01607 putative permease protein. (262 aa)
Smed_2137PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sme:SMc01608 putative ATP-binding ABC transporter protein; Belongs to the ABC transporter superfamily. (353 aa)
fbpCSpermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. (359 aa)
Smed_2168KEGG: sme:SMc01632 putative periplasmic binding ABC transporter protein. (386 aa)
Smed_2169PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01633 putative permease ABC transporter protein. (304 aa)
Smed_2170PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01634 putative permease ABC transporter protein. (272 aa)
Smed_2186Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc01651 putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family. (302 aa)
Smed_2187PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc01652 putative ABC transporter protein. (386 aa)
Smed_2188PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sme:SMc01653 putative ATP-binding ABC transporter protein; Belongs to the ABC transporter superfamily. (331 aa)
Smed_2189PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01654 putative permease ABC transporter protein. (316 aa)
Smed_2190PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01655 putative permease ABC transporter protein. (271 aa)
Smed_2406PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01963 putative spermidine/putrescine transport system permease ABC transporter protein. (266 aa)
Smed_2407PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01964 putative spermidine/putrescine transport system permease ABC transporter protein. (284 aa)
Smed_2408TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sme:SMc01965 putative spermidine/putrescine transport ATP-binding ABC transporter protein. (345 aa)
Smed_2409PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc01966 putative spermidine/putrescine-binding periplasmic ABC transporter protein. (359 aa)
Smed_2717TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; KEGG: sme:SMc04042 putative monophosphatase protein. (288 aa)
Smed_3281PFAM: extracellular solute-binding protein family 1; KEGG: rde:RD1_1059 iron ABC transporter iron-binding protein, putative. (343 aa)
Smed_3284PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bmb:BruAb2_0512 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (350 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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