STRINGSTRING
Smed_2392 Smed_2392 Smed_2394 Smed_2394 Smed_2395 Smed_2395 Smed_2396 Smed_2396 Smed_2397 Smed_2397
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_2392PFAM: Extracellular ligand-binding receptor; KEGG: sme:SMc01946 putative leucine-specific binding protein precursor. (372 aa)
Smed_2394PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc01948 probable high-affinity branched-chain amino acid transport ATP-binding ABC transporter protein. (241 aa)
Smed_2395PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc01949 probable high-affinity branched-chain amino acid transport ATP-binding ABC transporter protein. (295 aa)
Smed_2396PFAM: inner-membrane translocator; KEGG: sme:SMc01950 probable high-affinity branched-chain amino acid transport permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family. (461 aa)
Smed_2397PFAM: inner-membrane translocator; KEGG: sme:SMc01951 probable high-affinity branched-chain amino acid transport permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family. (300 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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