STRINGSTRING
Smed_0770 Smed_0770 Smed_3104 Smed_3104 Smed_2505 Smed_2505 Smed_2117 Smed_2117
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_0770PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00590 putative ABC transporter ATP-binding protein. (629 aa)
Smed_3104PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc03866 putative ATP-binding ABC transporter protein. (608 aa)
Smed_2505PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH01179 probable ABC transporter, ATP-binding protein. (506 aa)
Smed_2117PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc04454 putative ATP-binding ABC transporter protein. (549 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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