STRINGSTRING
Smed_1465 Smed_1465 Smed_1469 Smed_1469 Smed_1213 Smed_1213 Smed_2982 Smed_2982
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_1465TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sme:SMc00533 putative pyridoxal-phosphate-dependent aminotransferase protein; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (413 aa)
Smed_1469PFAM: aminotransferase class V; KEGG: sme:SMc00529 putative pyridoxal-phosphate-dependent aminotransferase protein. (402 aa)
Smed_1213PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rle:pRL80073 putative cysteine desulfurase. (393 aa)
Smed_2982TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; KEGG: gvi:gll2601 probable aminotransferase. (425 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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