STRINGSTRING
Smed_3370 Smed_3370 Smed_0722 Smed_0722 Smed_0884 Smed_0884 Smed_1542 Smed_1542 Smed_1543 Smed_1543 Smed_2662 Smed_2662 ndvA ndvA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_3370PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02836 putative ATP-binding ABC transporter protein. (601 aa)
Smed_0722PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00550 probable ABC transporter ATP-binding transmembrane protein. (627 aa)
Smed_0884TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: xft:PD1412 toxin secretion ABC transporter ATP-binding protein. (726 aa)
Smed_1542PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00186 putative ABC transporter ATP-binding transmembrane protein. (621 aa)
Smed_1543PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00185 putative ABC transporter ATP-binding transmembrane transmembrane protein. (617 aa)
Smed_2662TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc03991 probable ABC transporter ATP-binding transmembrane protein. (597 aa)
ndvAGlucan exporter ATP-binding protein; Involved in Beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (585 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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