STRINGSTRING
Smed_0302 Smed_0302 Smed_0387 Smed_0387 gatB gatB Smed_1389 Smed_1389 Smed_2130 Smed_2130 Smed_2416 Smed_2416 Smed_3294 Smed_3294
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_0302Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: sme:SMc00762 putative glutamine synthetase protein. (478 aa)
Smed_0387Glutamate--cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily. (457 aa)
gatBglutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (500 aa)
Smed_1389TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sme:SMc00948 glutamine synthetase I protein. (469 aa)
Smed_2130PFAM: glutamine synthetase catalytic region; KEGG: sme:SMc01594 probable glutamine synthetase. (454 aa)
Smed_2416PFAM: glutamine synthetase catalytic region; KEGG: sme:SMc01973 putative homologous to A glutamine synthetase protein. (455 aa)
Smed_3294PFAM: glutamine synthetase catalytic region; KEGG: sme:SMc02613 glutamine synthetase III protein. (461 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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