STRINGSTRING
Smed_0102 Smed_0102 Smed_0225 Smed_0225 Smed_0291 Smed_0291 Smed_0343 Smed_0343 Smed_0538 Smed_0538 Smed_0916 Smed_0916 Smed_0917 Smed_0917 Smed_1487 Smed_1487 Smed_1730 Smed_1730 Smed_1755 Smed_1755 Smed_2039 Smed_2039 Smed_2041 Smed_2041 Smed_2147 Smed_2147 Smed_2316 Smed_2316 Smed_2392 Smed_2392 Smed_2444 Smed_2444 Smed_2475 Smed_2475 Smed_2764 Smed_2764 Smed_2792 Smed_2792 Smed_2864 Smed_2864 Smed_3042 Smed_3042 Smed_3067 Smed_3067 Smed_3126 Smed_3126 Smed_3175 Smed_3175 Smed_3227 Smed_3227 Smed_3416 Smed_3416
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Smed_0102PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc02171 putative periplasmic binding ABC transporter protein. (341 aa)
Smed_0225TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; KEGG: sme:SMc02324 putative periplasmic binding ABC transporter protein. (329 aa)
Smed_0291Alanine racemase; PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sme:SMc03060 putative transcription regulator protein. (367 aa)
Smed_0343PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rxy:Rxyl_2603 twin-arginine translocation pathway signal. (319 aa)
Smed_0538PFAM: Extracellular ligand-binding receptor; KEGG: sme:SMc00078 probable LEU/ILE/VAL-binding protein. (368 aa)
Smed_0916KEGG: sme:SMc02021 putative periplasmic binding ABC transporter protein. (340 aa)
Smed_0917PFAM: regulatory protein LacI; KEGG: sme:SMc02022 putative transcription regulator protein. (330 aa)
Smed_1487PFAM: Extracellular ligand-binding receptor; KEGG: sme:SMc00513 putative amino acid-binding periplasmic protein. (362 aa)
Smed_1730PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sme:SMc04260 putative transcription regulator protein. (353 aa)
Smed_1755KEGG: sme:SMc04301 putative regulator protein. (388 aa)
Smed_2039PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mll7360 hypothetical protein. (345 aa)
Smed_2041KEGG: mlo:mll7366 ABC transporter binding protein. (314 aa)
Smed_2147PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rle:pRL100262 putative transcriptional regulator. (340 aa)
Smed_2316Alanine racemase; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20230 probable smc22-r protein. (334 aa)
Smed_2392PFAM: Extracellular ligand-binding receptor; KEGG: sme:SMc01946 putative leucine-specific binding protein precursor. (372 aa)
Smed_2444KEGG: sme:SMc02033 putative periplasmic binding protein. (395 aa)
Smed_2475Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc02338 putative periplasmic binding ABC transporter protein. (321 aa)
Smed_2764Alanine racemase; PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sme:SMc02975 putative phosphoenolpyruvate carboxykinase regulator transcription regulator protein. (340 aa)
Smed_2792PFAM: regulatory protein LacI; KEGG: sme:SMc03165 putative transcription regulator protein. (345 aa)
Smed_2864KEGG: sme:SMc03121 putative periplasmic binding ABC transporter protein. (401 aa)
Smed_3042ABC-type sugar transport system periplasmic component-like protein; KEGG: jan:Jann_2406 periplasmic binding protein/LacI transcriptional regulator. (315 aa)
Smed_3067PFAM: protein of unknown function DUF534; KEGG: sme:SMc03830 hypothetical protein. (317 aa)
Smed_3126Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: atc:AGR_C_3486 bifunctional carbohydrate binding and transport protein. (310 aa)
Smed_3175PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc04401 putative transcription regulator protein. (347 aa)
Smed_3227PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc02774 putative ABC transporter periplasmic binding protein. (329 aa)
Smed_3416PFAM: basic membrane lipoprotein; KEGG: sme:SMc02884 putative lipoprotein PRECURSOR. (330 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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