STRINGSTRING
pyrC pyrC Smed_0751 Smed_0751 Smed_0935 Smed_0935 Smed_1289 Smed_1289 ade ade Smed_2327 Smed_2327 Smed_2367 Smed_2367 ureC ureC Smed_2582 Smed_2582 Smed_2983 Smed_2983 Smed_3153 Smed_3153 Smed_3344 Smed_3344 Smed_3410 Smed_3410
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pyrCDihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. (347 aa)
Smed_0751PFAM: Amidohydrolase 3; KEGG: pfl:PFL_5025 amidohydrolase family protein. (575 aa)
Smed_0935TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: sme:SMc01361 putative dihydropyrimidinase protein. (430 aa)
Smed_1289TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sme:SMc01193 putative deoxyribonuclease. (259 aa)
adeTIGRFAM: adenine deaminase; PFAM: amidohydrolase; KEGG: sme:SMc01533 putative adenine deaminase protein; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family. (565 aa)
Smed_2327PFAM: peptidase M19 renal dipeptidase; KEGG: sme:SMc01524 putative dipeptidase protein. (353 aa)
Smed_2367TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; KEGG: sme:SMc01821 dihydropyrimidinase. (484 aa)
ureCTIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain protein; Amidohydrolase 3; KEGG: sme:SMc01837 urease alpha subunit protein; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. (570 aa)
Smed_2582TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; KEGG: sme:SMc00673 putative hydrolase protein. (457 aa)
Smed_2983TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; KEGG: pde:Pden_4616 dihydropyrimidinase. (477 aa)
Smed_3153PFAM: amidohydrolase 2; KEGG: pol:Bpro_2213 amidohydrolase 2. (281 aa)
Smed_3344Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism. (324 aa)
Smed_3410TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: sme:SMc02878 probable N-acetylglucosamine-6-phosphate deacetylase protein. (386 aa)
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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