(59 nodes) Mixed, incl. PCNA-Dependent Long Patch Base Excision Repair, and Carbohydrate-binding WSC network (Neurospora crassa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NCU10416	WSC domain-containing protein. (371 aa)
	NCU11337	Uncharacterized protein. (63 aa)
	trm5	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the class I-like SAM-binding methyltransferase superfamily. TRM5/TYW2 family. (475 aa)
	NCU03400	CBFD_NFYB_HMF domain-containing protein. (77 aa)
	NCU01607	Uncharacterized protein. (412 aa)
	NCU01826	DUF250 domain membrane protein. (399 aa)
	NCU01824	UDP-galactopyranose mutase. (517 aa)
	NCU09676	Uncharacterized protein. (425 aa)
	NCU03629	Uncharacterized protein. (112 aa)
	NCU01241	Mitochondrial carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (706 aa)
	NCU01209	Zn(2)-C6 fungal-type domain-containing protein. (520 aa)
	NCU08473	Alpha-1,3-glucanase. (1736 aa)
	cen-c	Centromere protein C. (755 aa)
	NCU08756	Uncharacterized protein. (443 aa)
	NCU00039	Uncharacterized protein. (622 aa)
	NCU00392	HTH CENPB-type domain-containing protein. (577 aa)
	NCU04070	Uncharacterized protein. (313 aa)
	NCU04028	Uncharacterized protein. (355 aa)
	NCU09762	Uncharacterized protein. (397 aa)
	NCU06932	F-box domain-containing protein. (627 aa)
	NCU09451	Uncharacterized protein. (462 aa)
	NCU05907	Uncharacterized protein. (129 aa)
	NCU09855	Nicotianamine synthase. (339 aa)
	NCU05935	Uncharacterized protein. (540 aa)
	NCU07388	Uncharacterized protein. (564 aa)
	NCU06050	Uncharacterized protein. (931 aa)
	NCU06045	WSC domain-containing protein. (315 aa)
	NCU05828	Amidohydro_3 domain-containing protein. (956 aa)
	NCU05820	Uncharacterized protein. (477 aa)
	NCU04691	Alpha-1,3-glucanase. (532 aa)
	NCU05605	Uncharacterized protein. (399 aa)
	NCU01277	Uncharacterized protein. (417 aa)
	NCU04219	Uncharacterized protein. (730 aa)
	NCU05212	Glycosyl hydrolase. (794 aa)
	NCU06592	HTH CENPB-type domain-containing protein. (419 aa)
	NCU07327	Uncharacterized protein. (173 aa)
	NCU06275	Uncharacterized protein. (329 aa)
	NCU09478	Uncharacterized protein. (213 aa)
	NCU00521	Uncharacterized protein. (259 aa)
	NCU09375	Uncharacterized protein. (267 aa)
	NCU02087	Uncharacterized protein. (644 aa)
	NCU09379	Uncharacterized protein. (326 aa)
	NCU02061	WSC domain-containing protein. (225 aa)
	cen-T	CEN-T. (599 aa)
	NCU02732	Uncharacterized protein. (534 aa)
	NCU02928	Uncharacterized protein. (1196 aa)
	NCU16653	Uncharacterized protein. (210 aa)
	NCU16705	Chromo domain-containing protein. (145 aa)
	NCU06467	Uncharacterized protein. (443 aa)
	NCU17155	Uncharacterized protein. (522 aa)
	NCU09860	Telomere silencing protein Zds1, variant. (870 aa)
	NCU04170	Uncharacterized protein. (2119 aa)
	NCU17088	Aspartyl aminopeptidase. (414 aa)
	NCU07949	Uncharacterized protein. (2912 aa)
	NCU06010	Mutanase, variant. (596 aa)
	NCU01158	Uncharacterized protein. (1038 aa)
	NCU01846	Uncharacterized protein. (434 aa)
	NCU04212	Uncharacterized protein. (511 aa)
	NCU02745	Uncharacterized protein. (379 aa)

Your Current Organism:

Neurospora crassa

NCBI taxonomy Id: 367110
Other names: N. crassa OR74A, Neurospora crassa 74-OR23-1V A, Neurospora crassa 74-OR23-1VA, Neurospora crassa FGSC 2489, Neurospora crassa FGSC 9013, Neurospora crassa N150, Neurospora crassa OR74A

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NCU00392	NCU03400	Q7RYR8	F5HD67	HTH CENPB-type domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.496
NCU00392	NCU06592	Q7RYR8	Q7S9S3	HTH CENPB-type domain-containing protein.	HTH CENPB-type domain-containing protein.	0.787
NCU00392	NCU09478	Q7RYR8	Q7SC05	HTH CENPB-type domain-containing protein.	Uncharacterized protein.	0.487
NCU00392	cen-T	Q7RYR8	Q7SEQ6	HTH CENPB-type domain-containing protein.	CEN-T.	0.483
NCU00392	cen-c	Q7RYR8	Q7RV28	HTH CENPB-type domain-containing protein.	Centromere protein C.	0.501
NCU01241	trm5	Q1K816	F5HAU9	Mitochondrial carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the class I-like SAM-binding methyltransferase superfamily. TRM5/TYW2 family.	0.481
NCU03400	NCU00392	F5HD67	Q7RYR8	CBFD_NFYB_HMF domain-containing protein.	HTH CENPB-type domain-containing protein.	0.496
NCU03400	NCU03629	F5HD67	Q1K7Q5	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.779
NCU03400	NCU06592	F5HD67	Q7S9S3	CBFD_NFYB_HMF domain-containing protein.	HTH CENPB-type domain-containing protein.	0.496
NCU03400	NCU09478	F5HD67	Q7SC05	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.750
NCU03400	cen-T	F5HD67	Q7SEQ6	CBFD_NFYB_HMF domain-containing protein.	CEN-T.	0.807
NCU03400	cen-c	F5HD67	Q7RV28	CBFD_NFYB_HMF domain-containing protein.	Centromere protein C.	0.837
NCU03629	NCU03400	Q1K7Q5	F5HD67	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.779
NCU03629	NCU09478	Q1K7Q5	Q7SC05	Uncharacterized protein.	Uncharacterized protein.	0.856
NCU03629	cen-T	Q1K7Q5	Q7SEQ6	Uncharacterized protein.	CEN-T.	0.905
NCU03629	cen-c	Q1K7Q5	Q7RV28	Uncharacterized protein.	Centromere protein C.	0.826
NCU06592	NCU00392	Q7S9S3	Q7RYR8	HTH CENPB-type domain-containing protein.	HTH CENPB-type domain-containing protein.	0.787
NCU06592	NCU03400	Q7S9S3	F5HD67	HTH CENPB-type domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.496
NCU06592	NCU09478	Q7S9S3	Q7SC05	HTH CENPB-type domain-containing protein.	Uncharacterized protein.	0.487
NCU06592	cen-T	Q7S9S3	Q7SEQ6	HTH CENPB-type domain-containing protein.	CEN-T.	0.486

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