Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NCU01067 | NCU01580 | Q1K8A2 | Q1K4W6 | CYCLIN domain-containing protein. | Transcription factor TFIIH subunit Tfb4. | 0.999 |
| NCU01067 | NCU01625 | Q1K8A2 | Q7RXF5 | CYCLIN domain-containing protein. | DNA repair helicase RAD3. | 0.998 |
| NCU01067 | NCU01831 | Q1K8A2 | Q1K578 | CYCLIN domain-containing protein. | General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. | 0.995 |
| NCU01067 | NCU02587 | Q1K8A2 | Q7SHN1 | CYCLIN domain-containing protein. | RNA polymerase II transcription factor B subunit 3. | 0.999 |
| NCU01067 | NCU05523 | Q1K8A2 | Q7S6R6 | CYCLIN domain-containing protein. | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | 0.995 |
| NCU01067 | NCU06438 | Q1K8A2 | Q7RYX9 | CYCLIN domain-containing protein. | DNA repair helicase RAD25. | 0.998 |
| NCU01067 | prk-3 | Q1K8A2 | Q1K6P8 | CYCLIN domain-containing protein. | Serine/threonine-protein kinase; Belongs to the protein kinase superfamily. | 0.999 |
| NCU01067 | rtf-1 | Q1K8A2 | Q8X0V0 | CYCLIN domain-containing protein. | General transcription and DNA repair factor IIH subunit rtf-1; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has b [...] | 0.871 |
| NCU01067 | tcf-29 | Q1K8A2 | Q9P5N7 | CYCLIN domain-containing protein. | General transcription and DNA repair factor IIH subunit tcf-29; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has [...] | 0.998 |
| NCU01580 | NCU01067 | Q1K4W6 | Q1K8A2 | Transcription factor TFIIH subunit Tfb4. | CYCLIN domain-containing protein. | 0.999 |
| NCU01580 | NCU01625 | Q1K4W6 | Q7RXF5 | Transcription factor TFIIH subunit Tfb4. | DNA repair helicase RAD3. | 0.999 |
| NCU01580 | NCU01831 | Q1K4W6 | Q1K578 | Transcription factor TFIIH subunit Tfb4. | General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. | 0.999 |
| NCU01580 | NCU02587 | Q1K4W6 | Q7SHN1 | Transcription factor TFIIH subunit Tfb4. | RNA polymerase II transcription factor B subunit 3. | 0.999 |
| NCU01580 | NCU05523 | Q1K4W6 | Q7S6R6 | Transcription factor TFIIH subunit Tfb4. | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | 0.999 |
| NCU01580 | NCU06438 | Q1K4W6 | Q7RYX9 | Transcription factor TFIIH subunit Tfb4. | DNA repair helicase RAD25. | 0.999 |
| NCU01580 | prk-3 | Q1K4W6 | Q1K6P8 | Transcription factor TFIIH subunit Tfb4. | Serine/threonine-protein kinase; Belongs to the protein kinase superfamily. | 0.999 |
| NCU01580 | rtf-1 | Q1K4W6 | Q8X0V0 | Transcription factor TFIIH subunit Tfb4. | General transcription and DNA repair factor IIH subunit rtf-1; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has b [...] | 0.998 |
| NCU01580 | tcf-29 | Q1K4W6 | Q9P5N7 | Transcription factor TFIIH subunit Tfb4. | General transcription and DNA repair factor IIH subunit tcf-29; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has [...] | 0.999 |
| NCU01625 | NCU01067 | Q7RXF5 | Q1K8A2 | DNA repair helicase RAD3. | CYCLIN domain-containing protein. | 0.998 |
| NCU01625 | NCU01580 | Q7RXF5 | Q1K4W6 | DNA repair helicase RAD3. | Transcription factor TFIIH subunit Tfb4. | 0.999 |
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