STRINGSTRING
mus-38 mus-38 NCU01625 NCU01625 NCU04508 NCU04508 NCU05120 NCU05120 NCU00120 NCU00120 NCU06438 NCU06438 NCU04058 NCU04058 NCU09860 NCU09860 NCU04212 NCU04212 NCU16387 NCU16387 NCU09500 NCU09500 NCU05945 NCU05945 NCU05943 NCU05943 rpa-3 rpa-3 NCU11012 NCU11012 NCU11357 NCU11357 ubi ubi ubi::crp-6 ubi::crp-6 NCU01580 NCU01580 NCU01831 NCU01831 NCU01824 NCU01824 NCU03528 NCU03528 NCU01515 NCU01515 prk-3 prk-3 NCU03797 NCU03797 rpa-1 rpa-1 NCU01067 NCU01067 cul-4 cul-4 NCU05907 NCU05907 NCU09855 NCU09855 cyp41 cyp41 tcf-29 tcf-29 NCU16653 NCU16653 NCU16705 NCU16705 NCU02457 NCU02457 NCU03782 NCU03782 NCU06889 NCU06889 NCU06739 NCU06739 NCU02281 NCU02281 NCU05820 NCU05820 mus-44 mus-44 NCU05523 NCU05523 NCU05305 NCU05305 NCU06623 NCU06623 dim-8 dim-8 msp-41 msp-41 NCU08030 NCU08030 NCU07998 NCU07998 csb csb NCU08553 NCU08553 NCU07866 NCU07866 mus-43 mus-43 rtf-1 rtf-1 msp-7 msp-7 NCU02563 NCU02563 NCU02587 NCU02587 NCU02661 NCU02661 mus-40 mus-40 NCU02605 NCU02605 NCU09259 NCU09259 NCU02103 NCU02103 NCU09378 NCU09378
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mus-38MUS38. (960 aa)
NCU01625DNA repair helicase RAD3. (806 aa)
NCU04508Uncharacterized protein. (75 aa)
NCU05120DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1287 aa)
NCU00120Uncharacterized protein. (1237 aa)
NCU06438DNA repair helicase RAD25. (862 aa)
NCU04058BZIP domain-containing protein. (306 aa)
NCU09860Telomere silencing protein Zds1, variant. (870 aa)
NCU04212Uncharacterized protein. (511 aa)
NCU16387XPGI domain-containing protein. (226 aa)
NCU09500ATPase_AAA_core domain-containing protein. (1353 aa)
NCU05945Uncharacterized protein. (408 aa)
NCU05943TFIIS central domain-containing protein. (1050 aa)
rpa-3Replication protein A-3. (108 aa)
NCU11012DNA-directed RNA polymerase I. (160 aa)
NCU11357Cell cycle control protein. (478 aa)
ubiPolyubiquitin; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys [...] (305 aa)
ubi::crp-6Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (154 aa)
NCU01580Transcription factor TFIIH subunit Tfb4. (439 aa)
NCU01831General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (469 aa)
NCU01824UDP-galactopyranose mutase. (517 aa)
NCU03528DNA polymerase delta subunit 4. (241 aa)
NCU01515DNA-directed RNA polymerase II polypeptide. (337 aa)
prk-3Serine/threonine-protein kinase; Belongs to the protein kinase superfamily. (407 aa)
NCU03797Ubiquitin C-terminal hydrolase; Belongs to the peptidase C19 family. (1162 aa)
rpa-1Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (610 aa)
NCU01067CYCLIN domain-containing protein. (427 aa)
cul-4Ubiquitin ligase subunit CulD; Belongs to the cullin family. (1039 aa)
NCU05907Uncharacterized protein. (129 aa)
NCU09855Nicotianamine synthase. (339 aa)
cyp4141 kDa peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. PPIase D subfamily. (375 aa)
tcf-29General transcription and DNA repair factor IIH subunit tcf-29; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has [...] (663 aa)
NCU16653Uncharacterized protein. (210 aa)
NCU16705Chromo domain-containing protein. (145 aa)
NCU02457DNA-directed polymerase kappa, variant. (646 aa)
NCU03782DNA-directed RNA polymerase II subunit RPB11. (133 aa)
NCU06889Uncharacterized protein. (532 aa)
NCU06739Peptidyl prolyl cis-trans isomerase Cyclophilin. (145 aa)
NCU02281USP domain-containing protein; Belongs to the peptidase C19 family. (1202 aa)
NCU05820Uncharacterized protein. (477 aa)
mus-44Mating-type switching protein swi10. (405 aa)
NCU05523RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (501 aa)
NCU05305DNA-directed RNA polymerase II polypeptide. (234 aa)
NCU06623CBFD_NFYB_HMF domain-containing protein. (304 aa)
dim-8DNA damage-binding protein 1. (1158 aa)
msp-41Pre-mRNA-splicing factor syf1; Involved in pre-mRNA splicing and cell cycle progression. (829 aa)
NCU08030DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
NCU07998Uncharacterized protein. (441 aa)
csbDNA repair protein Rhp26/Rad26. (1173 aa)
NCU08553DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (130 aa)
NCU07866Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1444 aa)
mus-43DNA repair protein rad14. (435 aa)
rtf-1General transcription and DNA repair factor IIH subunit rtf-1; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has b [...] (72 aa)
msp-7Pre-mRNA-splicing factor isy1; Involved in pre-mRNA splicing. (239 aa)
NCU02563Transcription elongation factor S-II. (298 aa)
NCU02587RNA polymerase II transcription factor B subunit 3. (362 aa)
NCU02661DNA-directed RNA polymerase II polypeptide. (171 aa)
mus-40DNA excision repair protein Rad2. (1269 aa)
NCU02605DNA-directed RNA polymerase I/II/III subunit 10. (84 aa)
NCU09259Uncharacterized protein. (625 aa)
NCU02103DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1761 aa)
NCU09378DNA-directed RNA polymerase II polypeptide. (146 aa)
Your Current Organism:
Neurospora crassa
NCBI taxonomy Id: 367110
Other names: N. crassa OR74A, Neurospora crassa 74-OR23-1V A, Neurospora crassa 74-OR23-1VA, Neurospora crassa FGSC 2489, Neurospora crassa FGSC 9013, Neurospora crassa N150, Neurospora crassa OR74A
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