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rpl1 rpl1 rpl11 rpl11 rpl2 rpl2 rpl30 rpl30 rps5 rps5 rpl19e rpl19e rps14 rps14 rps4e rps4e rps4 rps4 rps13 rps13 rps2 rps2 rpl18e rpl18e rps12 rps12 rpl30e rpl30e rpl40e rpl40e rpl35ae rpl35ae rps17e rps17e Tpen_0390 Tpen_0390 rpl37e rpl37e rps6e rps6e rpl18a rpl18a rps24e rps24e rpl14e rpl14e rps19e rps19e rps17 rps17 rpl29 rpl29 rpl22 rpl22 rpl37ae rpl37ae rpl10e rpl10e rpl6 rpl6 rpl34e rpl34e rpl44e rpl44e rps10 rps10 rps3ae rps3ae Tpen_1016 Tpen_1016
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl1LSU ribosomal protein L1P; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (225 aa)
rpl11LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (168 aa)
rpl2LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (248 aa)
rpl30TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30; KEGG: neq:NEQ311 LSU ribosomal protein L30P. (156 aa)
rps5SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. (202 aa)
rpl19eLSU ribosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (155 aa)
rps14SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles. (54 aa)
rps4ePFAM: RNA-binding S4 domain protein; Ribosomal protein S4E-like; Ribosomal protein S4E, central; KEGG: ape:APE0356 30S ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family. (251 aa)
rps4SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (172 aa)
rps13SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (157 aa)
rps2PFAM: ribosomal protein S2; KEGG: pai:PAE0817 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (214 aa)
rpl18eKEGG: tko:TK1502 LSU ribosomal protein L18E; Belongs to the eukaryotic ribosomal protein eL18 family. (120 aa)
rps12SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (147 aa)
rpl30ePFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: pab:PAB7152 50S ribosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family. (104 aa)
rpl40ePFAM: Ribosomal protein L40e; KEGG: pai:PAE3255 ribosomal protein L40; Belongs to the eukaryotic ribosomal protein eL40 family. (51 aa)
rpl35aePFAM: Ribosomal protein L35Ae; KEGG: mka:MK0155 ribosomal protein L35AE/L33A; Belongs to the eukaryotic ribosomal protein eL33 family. (85 aa)
rps17ePFAM: Ribosomal protein S17e; KEGG: pai:PAE0804 ribosomal protein S17; Belongs to the eukaryotic ribosomal protein eS17 family. (95 aa)
Tpen_0390PFAM: Ribosomal protein L15e; KEGG: ape:APE1452 50S ribosomal protein L15e. (187 aa)
rpl37eLSU ribosomal protein L37E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (63 aa)
rps6ePFAM: ribosomal protein S6e; KEGG: mka:MK1446 ribosomal protein S6E (S10); Belongs to the eukaryotic ribosomal protein eS6 family. (131 aa)
rpl18aPFAM: Ribosomal LX protein; KEGG: ape:APE1084a S ribosomal protein LX. (85 aa)
rps24ePFAM: Ribosomal protein S24e; KEGG: sso:SSO0435 30S ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family. (106 aa)
rpl14eKEGG: sto:STS054 50S ribosomal protein L14e; Belongs to the eukaryotic ribosomal protein eL14 family. (98 aa)
rps19eSSU ribosomal protein S19E; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (163 aa)
rps17SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (111 aa)
rpl29PFAM: ribosomal protein L29; KEGG: sso:SSO6397 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (84 aa)
rpl22LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (127 aa)
rpl37aeLSU ribosomal protein L37AE; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family. Putative zinc-binding subfamily. (91 aa)
rpl10ePFAM: Ribosomal protein L10E; KEGG: pai:PAE3567 ribosomal protein L10; Belongs to the universal ribosomal protein uL16 family. (168 aa)
rpl6LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (191 aa)
rpl34ePFAM: Ribosomal protein L34e; KEGG: mja:MJ0655 50S ribosomal protein L34e; Belongs to the eukaryotic ribosomal protein eL34 family. (91 aa)
rpl44eLSU ribosomal protein L44E; Binds to the 23S rRNA. (95 aa)
rps10SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (109 aa)
rps3aePFAM: ribosomal protein S3Ae; KEGG: pfu:PF2054 30S ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family. (207 aa)
Tpen_1016KEGG: pai:PAE2188 small subunit ribosomal protein S25e. (112 aa)
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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