STRINGSTRING
rpl19e rpl19e rpl30 rpl30 rpl15 rpl15 rpl4 rpl4 rpl2 rpl2 rpl11 rpl11 rpl1 rpl1 rpl10 rpl10 rpl6 rpl6 rpl22 rpl22 rpl29 rpl29 Tpen_0390 Tpen_0390 rpl30e rpl30e rpl18e rpl18e rpl13 rpl13 rpl24 rpl24 rpl32e rpl32e
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl19eLSU ribosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (155 aa)
rpl30TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30; KEGG: neq:NEQ311 LSU ribosomal protein L30P. (156 aa)
rpl15LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (151 aa)
rpl4LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. (267 aa)
rpl2LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (248 aa)
rpl11LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (168 aa)
rpl1LSU ribosomal protein L1P; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (225 aa)
rpl10LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (294 aa)
rpl6LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (191 aa)
rpl22LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (127 aa)
rpl29PFAM: ribosomal protein L29; KEGG: sso:SSO6397 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (84 aa)
Tpen_0390PFAM: Ribosomal protein L15e; KEGG: ape:APE1452 50S ribosomal protein L15e. (187 aa)
rpl30ePFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: pab:PAB7152 50S ribosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family. (104 aa)
rpl18eKEGG: tko:TK1502 LSU ribosomal protein L18E; Belongs to the eukaryotic ribosomal protein eL18 family. (120 aa)
rpl13LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (154 aa)
rpl24LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (131 aa)
rpl32ePFAM: Ribosomal protein L32e; KEGG: pai:PAE2099 ribosomal protein L32; Belongs to the eukaryotic ribosomal protein eL32 family. (159 aa)
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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