47 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K1WPJ7	Chromo domain-containing protein. (529 aa)
	A0A2K1WX11	WD_REPEATS_REGION domain-containing protein. (503 aa)
	A0A2K1XT21	Histone domain-containing protein. (152 aa)
	A0A2K1ZB88	Uncharacterized protein. (1621 aa)
	A0A2K1ZK56	Uncharacterized protein. (3441 aa)
	A0A2K1ZP92	Uncharacterized protein. (919 aa)
	A0A2K2ACX0	Uncharacterized protein. (609 aa)
	A0A2K2AFG9	Uncharacterized protein. (75 aa)
	A0A2K2AGJ8	Uncharacterized protein. (931 aa)
	A0A2K2AIJ1	Uncharacterized protein. (2260 aa)
	A0A2K2B180	WD_REPEATS_REGION domain-containing protein. (459 aa)
	A0A2K2B7E8	Uncharacterized protein. (420 aa)
	A0A2K2B7F1	VEFS-Box domain-containing protein. (205 aa)
	A0A2K2BAA2	Uncharacterized protein. (487 aa)
	A0A2K2BAA5	Histone domain-containing protein. (70 aa)
	A0A2K2BAD3	Histone domain-containing protein. (88 aa)
	A0A2K2BME7	WD_REPEATS_REGION domain-containing protein. (421 aa)
	A0A2K2BU79	VEFS-Box domain-containing protein. (643 aa)
	A0A2K2C1A8	Histone domain-containing protein; Belongs to the histone H2B family. (163 aa)
	A0A2K2C685	Plus3 domain-containing protein. (557 aa)
	A0A3N7EIX8	Uncharacterized protein. (61 aa)
	A0A3N7F1W5	Uncharacterized protein. (1475 aa)
	POPTR_T172107	Uncharacterized protein. (90 aa)
	A0A3N7FII9	Histone H2B; Belongs to the histone H2B family. (148 aa)
	A0A3N7FNR9	Uncharacterized protein. (1627 aa)
	A0A3N7FQY3	Plus3 domain-containing protein. (924 aa)
	A0A3N7FX79	Chromo domain-containing protein. (438 aa)
	A0A3N7FZZ3	Uncharacterized protein. (953 aa)
	A0A3N7G994	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (92 aa)
	A0A3N7GHC3	Histone H2B; Belongs to the histone H2B family. (230 aa)
	A0A3N7HJD5	Uncharacterized protein. (887 aa)
	A9PDA6_POPTR	Histone H2A; Belongs to the histone H2A family. (145 aa)
	A9PDX1_POPTR	Histone H2A; Belongs to the histone H2A family. (149 aa)
	B9GYN4_POPTR	VEFS-Box domain-containing protein. (433 aa)
	B9H1A2_POPTR	WD_REPEATS_REGION domain-containing protein. (417 aa)
	B9H1Y2_POPTR	Histone H2A; Belongs to the histone H2A family. (130 aa)
	B9H7V1_POPTR	Uncharacterized protein. (508 aa)
	B9HUV8_POPTR	Histone H2B; Belongs to the histone H2B family. (140 aa)
	B9I3Q8_POPTR	COMM domain-containing protein. (198 aa)
	B9I5G6_POPTR	Uncharacterized protein. (456 aa)
	B9I7J5_POPTR	Histone H2A; Belongs to the histone H2A family. (145 aa)
	B9IB49_POPTR	WD_REPEATS_REGION domain-containing protein. (424 aa)
	U5GCI2_POPTR	Histone H2B; Belongs to the histone H2B family. (148 aa)
	U5GK72_POPTR	Histone domain-containing protein. (70 aa)
	U5GKP7_POPTR	Histone H2B; Belongs to the histone H2B family. (147 aa)
	U5GWF8_POPTR	Histone H2A; Belongs to the histone H2A family. (169 aa)
	U5GWG5_POPTR	WD_REPEATS_REGION domain-containing protein. (371 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1WPJ7	A0A2K1WX11	A0A2K1WPJ7	A0A2K1WX11	Chromo domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.523
A0A2K1WPJ7	A0A2K1XT21	A0A2K1WPJ7	A0A2K1XT21	Chromo domain-containing protein.	Histone domain-containing protein.	0.822
A0A2K1WPJ7	A0A2K1ZB88	A0A2K1WPJ7	A0A2K1ZB88	Chromo domain-containing protein.	Uncharacterized protein.	0.505
A0A2K1WPJ7	A0A2K1ZK56	A0A2K1WPJ7	A0A2K1ZK56	Chromo domain-containing protein.	Uncharacterized protein.	0.749
A0A2K1WPJ7	A0A2K1ZP92	A0A2K1WPJ7	A0A2K1ZP92	Chromo domain-containing protein.	Uncharacterized protein.	0.612
A0A2K1WPJ7	A0A2K2ACX0	A0A2K1WPJ7	A0A2K2ACX0	Chromo domain-containing protein.	Uncharacterized protein.	0.822
A0A2K1WPJ7	A0A2K2AFG9	A0A2K1WPJ7	A0A2K2AFG9	Chromo domain-containing protein.	Uncharacterized protein.	0.822
A0A2K1WPJ7	A0A2K2AGJ8	A0A2K1WPJ7	A0A2K2AGJ8	Chromo domain-containing protein.	Uncharacterized protein.	0.612
A0A2K1WPJ7	A0A2K2AIJ1	A0A2K1WPJ7	A0A2K2AIJ1	Chromo domain-containing protein.	Uncharacterized protein.	0.612
A0A2K1WPJ7	A0A2K2B180	A0A2K1WPJ7	A0A2K2B180	Chromo domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.523
A0A2K1WPJ7	A0A2K2B7E8	A0A2K1WPJ7	A0A2K2B7E8	Chromo domain-containing protein.	Uncharacterized protein.	0.566
A0A2K1WPJ7	A0A2K2B7F1	A0A2K1WPJ7	A0A2K2B7F1	Chromo domain-containing protein.	VEFS-Box domain-containing protein.	0.566
A0A2K1WPJ7	A0A2K2BAA2	A0A2K1WPJ7	A0A2K2BAA2	Chromo domain-containing protein.	Uncharacterized protein.	0.822
A0A2K1WPJ7	A0A2K2BAA5	A0A2K1WPJ7	A0A2K2BAA5	Chromo domain-containing protein.	Histone domain-containing protein.	0.822
A0A2K1WPJ7	A0A2K2BAD3	A0A2K1WPJ7	A0A2K2BAD3	Chromo domain-containing protein.	Histone domain-containing protein.	0.822
A0A2K1WPJ7	A0A2K2BME7	A0A2K1WPJ7	A0A2K2BME7	Chromo domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.699
A0A2K1WPJ7	A0A2K2BU79	A0A2K1WPJ7	A0A2K2BU79	Chromo domain-containing protein.	VEFS-Box domain-containing protein.	0.566
A0A2K1WPJ7	A0A2K2C1A8	A0A2K1WPJ7	A0A2K2C1A8	Chromo domain-containing protein.	Histone domain-containing protein; Belongs to the histone H2B family.	0.419
A0A2K1WPJ7	A0A2K2C685	A0A2K1WPJ7	A0A2K2C685	Chromo domain-containing protein.	Plus3 domain-containing protein.	0.489
A0A2K1WPJ7	A0A3N7EIX8	A0A2K1WPJ7	A0A3N7EIX8	Chromo domain-containing protein.	Uncharacterized protein.	0.743

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