22 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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gene fusions

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protein homology

Your Input:
	A0A2K1YD70	Uncharacterized protein. (143 aa)
	A0A2K1Z5I7	RPOLD domain-containing protein. (311 aa)
	A0A2K2A8P8	Uncharacterized protein. (260 aa)
	A0A2K2APS7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1198 aa)
	A0A2K2B9R7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1916 aa)
	A0A3N7EGM1	RNA_pol_Rpb1_1 domain-containing protein. (174 aa)
	A0A3N7FS84	Uncharacterized protein. (51 aa)
	A0A3N7FVT8	LisH domain-containing protein. (1617 aa)
	A0A3N7FZP9	RTR1-type domain-containing protein. (713 aa)
	POPTR_T172036	LisH domain-containing protein. (937 aa)
	A0A3N7GFA5	TFIIS-type domain-containing protein. (93 aa)
	A9PCB4_POPTR	RNA_pol_L_2 domain-containing protein. (116 aa)
	A9PF10_POPTR	Uncharacterized protein. (71 aa)
	A9PGQ8_POPTR	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (143 aa)
	B9GGV6_POPTR	Uncharacterized protein. (176 aa)
	B9H5K4_POPTR	RPOL4c domain-containing protein. (138 aa)
	B9HIQ4_POPTR	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
	B9HUM8_POPTR	SHS2_Rpb7-N domain-containing protein. (189 aa)
	B9ID35_POPTR	Uncharacterized protein. (143 aa)
	B9N3V2_POPTR	RPOL4c domain-containing protein. (197 aa)
	B9N7D1_POPTR	Uncharacterized protein. (206 aa)
	U5FVM2_POPTR	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (148 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1YD70	A0A2K1Z5I7	A0A2K1YD70	A0A2K1Z5I7	Uncharacterized protein.	RPOLD domain-containing protein.	0.998
A0A2K1YD70	A0A2K2A8P8	A0A2K1YD70	A0A2K2A8P8	Uncharacterized protein.	Uncharacterized protein.	0.952
A0A2K1YD70	A0A2K2APS7	A0A2K1YD70	A0A2K2APS7	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.941
A0A2K1YD70	A0A2K2B9R7	A0A2K1YD70	A0A2K2B9R7	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.960
A0A2K1YD70	A0A3N7EGM1	A0A2K1YD70	A0A3N7EGM1	Uncharacterized protein.	RNA_pol_Rpb1_1 domain-containing protein.	0.960
A0A2K1YD70	A0A3N7FS84	A0A2K1YD70	A0A3N7FS84	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A2K1YD70	A0A3N7FVT8	A0A2K1YD70	A0A3N7FVT8	Uncharacterized protein.	LisH domain-containing protein.	0.960
A0A2K1YD70	A0A3N7FZP9	A0A2K1YD70	A0A3N7FZP9	Uncharacterized protein.	RTR1-type domain-containing protein.	0.968
A0A2K1YD70	A0A3N7GFA5	A0A2K1YD70	A0A3N7GFA5	Uncharacterized protein.	TFIIS-type domain-containing protein.	0.996
A0A2K1YD70	A9PCB4_POPTR	A0A2K1YD70	A9PCB4	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.995
A0A2K1YD70	A9PF10_POPTR	A0A2K1YD70	A9PF10	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A2K1YD70	A9PGQ8_POPTR	A0A2K1YD70	A9PGQ8	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.991
A0A2K1YD70	B9GGV6_POPTR	A0A2K1YD70	B9GGV6	Uncharacterized protein.	Uncharacterized protein.	0.967
A0A2K1YD70	B9H5K4_POPTR	A0A2K1YD70	B9H5K4	Uncharacterized protein.	RPOL4c domain-containing protein.	0.994
A0A2K1YD70	B9HIQ4_POPTR	A0A2K1YD70	B9HIQ4	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.996
A0A2K1YD70	B9HUM8_POPTR	A0A2K1YD70	B9HUM8	Uncharacterized protein.	SHS2_Rpb7-N domain-containing protein.	0.928
A0A2K1YD70	B9ID35_POPTR	A0A2K1YD70	B9ID35	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A2K1YD70	B9N3V2_POPTR	A0A2K1YD70	B9N3V2	Uncharacterized protein.	RPOL4c domain-containing protein.	0.984
A0A2K1YD70	B9N7D1_POPTR	A0A2K1YD70	B9N7D1	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A2K1YD70	POPTR_T172036	A0A2K1YD70	A0A3N7G8Z3	Uncharacterized protein.	LisH domain-containing protein.	0.960

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