44 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K1XVL8	Uncharacterized protein. (397 aa)
	A0A2K1Y2A1	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (280 aa)
	A0A2K1Y490	Uncharacterized protein. (227 aa)
	A0A2K1Y5J8	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (93 aa)
	A0A2K1YE66	Uncharacterized protein. (146 aa)
	A0A2K1YKM8	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (228 aa)
	A0A2K1ZIM6	Uncharacterized protein. (104 aa)
	A0A2K1ZNX9	Ribosomal_TL5_C domain-containing protein. (261 aa)
	A0A2K1ZSH7	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (160 aa)
	A0A2K1ZYQ4	Uncharacterized protein. (105 aa)
	A0A2K2AG95	Ribosomal_TL5_C domain-containing protein. (257 aa)
	A0A2K2AS99	Uncharacterized protein. (152 aa)
	A0A2K2BCS3	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (120 aa)
	A0A2K2BMF5	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (447 aa)
	A0A2K2BN27	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (215 aa)
	A0A2K2CB05	Uncharacterized protein. (154 aa)
	A0A3N7EDB9	RRF domain-containing protein. (273 aa)
	A9P8K2_POPTR	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (227 aa)
	A9P954_POPTR	Uncharacterized protein. (58 aa)
	A9P9X1_POPTR	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (155 aa)
	A9PBS4_POPTR	Uncharacterized protein. (241 aa)
	A9PBU0_POPTR	Uncharacterized protein. (187 aa)
	A9PCT1_POPTR	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (194 aa)
	A9PED8_POPTR	Uncharacterized protein. (266 aa)
	A9PEU7_POPTR	Uncharacterized protein. (225 aa)
	A9PFR0_POPTR	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (315 aa)
	B9GJ65_POPTR	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (230 aa)
	B9GJU7_POPTR	Uncharacterized protein. (194 aa)
	B9H473_POPTR	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (160 aa)
	B9HAK1_POPTR	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (97 aa)
	B9HM04_POPTR	Uncharacterized protein. (227 aa)
	B9HSH5_POPTR	Uncharacterized protein. (153 aa)
	B9HU05_POPTR	Uncharacterized protein. (227 aa)
	B9I3F7_POPTR	Uncharacterized protein. (242 aa)
	B9I8P1_POPTR	Uncharacterized protein. (262 aa)
	B9IEG6_POPTR	Uncharacterized protein. (528 aa)
	B9ILF9_POPTR	Uncharacterized protein. (229 aa)
	B9IMZ0_POPTR	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (132 aa)
	U5FIK1_POPTR	Uncharacterized protein. (105 aa)
	U5FMH0_POPTR	Uncharacterized protein. (272 aa)
	U5FZU3_POPTR	Uncharacterized protein. (70 aa)
	U5GCN5_POPTR	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (126 aa)
	U5GW75_POPTR	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (249 aa)
	U7E2I6_POPTR	Uncharacterized protein. (149 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1XVL8	A0A2K1Y2A1	A0A2K1XVL8	A0A2K1Y2A1	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.944
A0A2K1XVL8	A0A2K1Y490	A0A2K1XVL8	A0A2K1Y490	Uncharacterized protein.	Uncharacterized protein.	0.950
A0A2K1XVL8	A0A2K1Y5J8	A0A2K1XVL8	A0A2K1Y5J8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.932
A0A2K1XVL8	A0A2K1YE66	A0A2K1XVL8	A0A2K1YE66	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A2K1XVL8	A0A2K1YKM8	A0A2K1XVL8	A0A2K1YKM8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.954
A0A2K1XVL8	A0A2K1ZIM6	A0A2K1XVL8	A0A2K1ZIM6	Uncharacterized protein.	Uncharacterized protein.	0.899
A0A2K1XVL8	A0A2K1ZNX9	A0A2K1XVL8	A0A2K1ZNX9	Uncharacterized protein.	Ribosomal_TL5_C domain-containing protein.	0.948
A0A2K1XVL8	A0A2K1ZSH7	A0A2K1XVL8	A0A2K1ZSH7	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.914
A0A2K1XVL8	A0A2K1ZYQ4	A0A2K1XVL8	A0A2K1ZYQ4	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A2K1XVL8	A0A2K2AG95	A0A2K1XVL8	A0A2K2AG95	Uncharacterized protein.	Ribosomal_TL5_C domain-containing protein.	0.948
A0A2K1XVL8	A0A2K2AS99	A0A2K1XVL8	A0A2K2AS99	Uncharacterized protein.	Uncharacterized protein.	0.938
A0A2K1XVL8	A0A2K2BCS3	A0A2K1XVL8	A0A2K2BCS3	Uncharacterized protein.	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.972
A0A2K1XVL8	A0A2K2BMF5	A0A2K1XVL8	A0A2K2BMF5	Uncharacterized protein.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.900
A0A2K1XVL8	A0A2K2BN27	A0A2K1XVL8	A0A2K2BN27	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.902
A0A2K1XVL8	A0A2K2CB05	A0A2K1XVL8	A0A2K2CB05	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A2K1XVL8	A0A3N7EDB9	A0A2K1XVL8	A0A3N7EDB9	Uncharacterized protein.	RRF domain-containing protein.	0.910
A0A2K1XVL8	A9P8K2_POPTR	A0A2K1XVL8	A9P8K2	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.943
A0A2K1XVL8	A9P954_POPTR	A0A2K1XVL8	A9P954	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A2K1XVL8	A9P9X1_POPTR	A0A2K1XVL8	A9P9X1	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.948
A0A2K1XVL8	A9PBS4_POPTR	A0A2K1XVL8	A9PBS4	Uncharacterized protein.	Uncharacterized protein.	0.972

page 1 of 94

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About