16 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K1Y2A1	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (280 aa)
	A0A2K1Y490	Uncharacterized protein. (227 aa)
	A0A2K1YKM8	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (228 aa)
	A0A2K2AS99	Uncharacterized protein. (152 aa)
	A0A2K2BCS3	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (120 aa)
	A9P954_POPTR	Uncharacterized protein. (58 aa)
	A9PCT1_POPTR	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (194 aa)
	A9PED8_POPTR	Uncharacterized protein. (266 aa)
	A9PFR0_POPTR	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (315 aa)
	B9GJ65_POPTR	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (230 aa)
	B9GJU7_POPTR	Uncharacterized protein. (194 aa)
	B9H473_POPTR	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (160 aa)
	B9I3F7_POPTR	Uncharacterized protein. (242 aa)
	B9ILF9_POPTR	Uncharacterized protein. (229 aa)
	B9IMZ0_POPTR	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (132 aa)
	U5GW75_POPTR	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (249 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1Y2A1	A0A2K1Y490	A0A2K1Y2A1	A0A2K1Y490	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.953
A0A2K1Y2A1	A0A2K1YKM8	A0A2K1Y2A1	A0A2K1YKM8	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.964
A0A2K1Y2A1	A0A2K2AS99	A0A2K1Y2A1	A0A2K2AS99	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.947
A0A2K1Y2A1	A0A2K2BCS3	A0A2K1Y2A1	A0A2K2BCS3	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.956
A0A2K1Y2A1	A9P954_POPTR	A0A2K1Y2A1	A9P954	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.972
A0A2K1Y2A1	A9PCT1_POPTR	A0A2K1Y2A1	A9PCT1	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.981
A0A2K1Y2A1	A9PED8_POPTR	A0A2K1Y2A1	A9PED8	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.985
A0A2K1Y2A1	A9PFR0_POPTR	A0A2K1Y2A1	A9PFR0	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.907
A0A2K1Y2A1	B9GJ65_POPTR	A0A2K1Y2A1	B9GJ65	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.964
A0A2K1Y2A1	B9GJU7_POPTR	A0A2K1Y2A1	B9GJU7	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.977
A0A2K1Y2A1	B9H473_POPTR	A0A2K1Y2A1	B9H473	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.924
A0A2K1Y2A1	B9I3F7_POPTR	A0A2K1Y2A1	B9I3F7	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.978
A0A2K1Y2A1	B9ILF9_POPTR	A0A2K1Y2A1	B9ILF9	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.971
A0A2K1Y2A1	B9IMZ0_POPTR	A0A2K1Y2A1	B9IMZ0	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.948
A0A2K1Y2A1	U5GW75_POPTR	A0A2K1Y2A1	U5GW75	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.978
A0A2K1Y490	A0A2K1Y2A1	A0A2K1Y490	A0A2K1Y2A1	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.953
A0A2K1Y490	A0A2K1YKM8	A0A2K1Y490	A0A2K1YKM8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.966
A0A2K1Y490	A0A2K2AS99	A0A2K1Y490	A0A2K2AS99	Uncharacterized protein.	Uncharacterized protein.	0.969
A0A2K1Y490	A0A2K2BCS3	A0A2K1Y490	A0A2K2BCS3	Uncharacterized protein.	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.995
A0A2K1Y490	A9P954_POPTR	A0A2K1Y490	A9P954	Uncharacterized protein.	Uncharacterized protein.	0.986

page 1 of 12

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About