STRINGSTRING
rps2 rps2 rps14 rps14 rps18 rps18 rpl20 rpl20 rps12-A rps12-A rpoA rpoA rps11 rps11 rpl36 rpl36 rps8 rps8 rpl16 rpl16 rpl22 rpl22 rps19-1 rps19-1 rpl2-A rpl2-A rps7-A rps7-A rps15 rps15 A9PB01_POPTR A9PB01_POPTR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rps230S ribosomal protein S2, chloroplastic. (236 aa)
rps1430S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles. (100 aa)
rps1830S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family. (101 aa)
rpl2050S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (117 aa)
rps12-A30S ribosomal protein S12-A, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity). (123 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (339 aa)
rps1130S ribosomal protein S11, chloroplastic; Belongs to the universal ribosomal protein uS11 family. (138 aa)
rpl3650S ribosomal protein L36, chloroplastic. (37 aa)
rps830S ribosomal protein S8, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit. (134 aa)
rpl1650S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (135 aa)
rpl2250S ribosomal protein L22, chloroplastic; This protein binds specifically to 23S rRNA; Belongs to the universal ribosomal protein uL22 family. (132 aa)
rps19-130S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)
rpl2-A50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family. (274 aa)
rps7-A30S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. (155 aa)
rps1530S ribosomal protein S15, chloroplastic; Belongs to the universal ribosomal protein uS15 family. (90 aa)
A9PB01_POPTRUncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (210 aa)
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.