STRINGSTRING
matK matK POPTR_T006200 POPTR_T006200 A0A2K1XI08 A0A2K1XI08 ycf2 ycf2 A0A2K1Y5M3 A0A2K1Y5M3 A0A2K1YN78 A0A2K1YN78 A0A2K1Z4K7 A0A2K1Z4K7 A0A2K2ASQ0 A0A2K2ASQ0 POPTR_T058700 POPTR_T058700 matK-2 matK-2 POPTR_T058800 POPTR_T058800 matK-3 matK-3 rpoC2 rpoC2 rpoC1 rpoC1 rpoB rpoB ycf3 ycf3 rbcL rbcL ycf4 ycf4 cemA cemA psbN psbN rpl23 rpl23 ycf2-1 ycf2-1 TIC214 TIC214 A9PFS6_POPTR A9PFS6_POPTR A9PHQ1_POPTR A9PHQ1_POPTR A9PI67_POPTR A9PI67_POPTR B9MUA4_POPTR B9MUA4_POPTR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
matKMaturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily. (510 aa)
POPTR_T006200RuBisCO_large domain-containing protein. (163 aa)
A0A2K1XI08RuBisCO_small domain-containing protein. (177 aa)
ycf2Protein Ycf2; Probable ATPase of unknown function. Its presence in a non- photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis; Belongs to the Ycf2 family. (1562 aa)
A0A2K1Y5M3Protein Ycf2; Probable ATPase of unknown function. Its presence in a non- photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis; Belongs to the Ycf2 family. (1889 aa)
A0A2K1YN78Uncharacterized protein. (114 aa)
A0A2K1Z4K7Protein PsbN; May play a role in photosystem I and II biogenesis. (50 aa)
A0A2K2ASQ0Uncharacterized protein; Belongs to the universal ribosomal protein uL23 family. (77 aa)
POPTR_T058700Uncharacterized protein; May be involved in proton extrusion. Indirectly promotes efficient inorganic carbon uptake. (228 aa)
matK-2Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily. (432 aa)
POPTR_T058800Uncharacterized protein. (133 aa)
matK-3Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily. (510 aa)
rpoC2DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1390 aa)
rpoC1DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily. (689 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1070 aa)
ycf3Photosystem I assembly protein Ycf3; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits; Belongs to the Ycf3 family. (168 aa)
rbcLRibulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. (475 aa)
ycf4Photosystem I assembly protein Ycf4; Seems to be required for the assembly of the photosystem I complex; Belongs to the Ycf4 family. (184 aa)
cemAChloroplast envelope membrane protein; May be involved in proton extrusion. Indirectly promotes efficient inorganic carbon uptake into chloroplasts. Belongs to the Cema family. (228 aa)
psbNProtein PsbN; May play a role in photosystem I and II biogenesis. Belongs to the PsbN family. (43 aa)
rpl2350S ribosomal protein L23, chloroplastic; Binds to 23S rRNA. (93 aa)
ycf2-1Protein Ycf2; Probable ATPase of unknown function. Its presence in a non- photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis; Belongs to the Ycf2 family. (2285 aa)
TIC214Protein TIC 214; Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein- conducting channel at the inner envelope. Belongs to the TIC214 family. (1822 aa)
A9PFS6_POPTRRibulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site. (182 aa)
A9PHQ1_POPTRRibulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site. (181 aa)
A9PI67_POPTRRibulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO small chain family. (170 aa)
B9MUA4_POPTRPhosphoribulokinase. (405 aa)
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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