(15 nodes) Mixed, incl. snRNA-activating protein complex subunit 1, and Jacalin-like lectin domain, plant network (Populus trichocarpa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K1XCI5	Uncharacterized protein. (264 aa)
	A0A2K1XPI5	RING-type domain-containing protein. (337 aa)
	A0A2K1YU31	Uncharacterized protein. (77 aa)
	A0A2K1YU74	Uncharacterized protein. (204 aa)
	A0A2K2AYI7	MADS-box domain-containing protein. (258 aa)
	A0A3N7FQC6	Uncharacterized protein. (153 aa)
	A0A3N7FUG9	Jacalin-type lectin domain-containing protein. (191 aa)
	A0A3N7H0V0	Uncharacterized protein. (122 aa)
	A0A3N7HT61	Uncharacterized protein. (1245 aa)
	B9H0P0_POPTR	Uncharacterized protein. (69 aa)
	B9H354_POPTR	Uncharacterized protein. (142 aa)
	B9H355_POPTR	Uncharacterized protein. (142 aa)
	B9IDU1_POPTR	TF-B3 domain-containing protein. (119 aa)
	B9NGB0_POPTR	Uncharacterized protein. (338 aa)
	U5G664_POPTR	Uncharacterized protein. (310 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1XCI5	A0A2K1XPI5	A0A2K1XCI5	A0A2K1XPI5	Uncharacterized protein.	RING-type domain-containing protein.	0.412
A0A2K1XCI5	A0A2K1YU31	A0A2K1XCI5	A0A2K1YU31	Uncharacterized protein.	Uncharacterized protein.	0.456
A0A2K1XCI5	A0A2K1YU74	A0A2K1XCI5	A0A2K1YU74	Uncharacterized protein.	Uncharacterized protein.	0.513
A0A2K1XCI5	A0A2K2AYI7	A0A2K1XCI5	A0A2K2AYI7	Uncharacterized protein.	MADS-box domain-containing protein.	0.439
A0A2K1XCI5	A0A3N7FQC6	A0A2K1XCI5	A0A3N7FQC6	Uncharacterized protein.	Uncharacterized protein.	0.500
A0A2K1XCI5	B9H354_POPTR	A0A2K1XCI5	B9H354	Uncharacterized protein.	Uncharacterized protein.	0.451
A0A2K1XCI5	B9H355_POPTR	A0A2K1XCI5	B9H355	Uncharacterized protein.	Uncharacterized protein.	0.464
A0A2K1XCI5	B9IDU1_POPTR	A0A2K1XCI5	B9IDU1	Uncharacterized protein.	TF-B3 domain-containing protein.	0.456
A0A2K1XCI5	U5G664_POPTR	A0A2K1XCI5	U5G664	Uncharacterized protein.	Uncharacterized protein.	0.418
A0A2K1XPI5	A0A2K1XCI5	A0A2K1XPI5	A0A2K1XCI5	RING-type domain-containing protein.	Uncharacterized protein.	0.412
A0A2K1XPI5	B9IDU1_POPTR	A0A2K1XPI5	B9IDU1	RING-type domain-containing protein.	TF-B3 domain-containing protein.	0.412
A0A2K1XPI5	B9NGB0_POPTR	A0A2K1XPI5	B9NGB0	RING-type domain-containing protein.	Uncharacterized protein.	0.406
A0A2K1YU31	A0A2K1XCI5	A0A2K1YU31	A0A2K1XCI5	Uncharacterized protein.	Uncharacterized protein.	0.456
A0A2K1YU31	B9H0P0_POPTR	A0A2K1YU31	B9H0P0	Uncharacterized protein.	Uncharacterized protein.	0.448
A0A2K1YU31	B9NGB0_POPTR	A0A2K1YU31	B9NGB0	Uncharacterized protein.	Uncharacterized protein.	0.414
A0A2K1YU74	A0A2K1XCI5	A0A2K1YU74	A0A2K1XCI5	Uncharacterized protein.	Uncharacterized protein.	0.513
A0A2K1YU74	A0A3N7FQC6	A0A2K1YU74	A0A3N7FQC6	Uncharacterized protein.	Uncharacterized protein.	0.455
A0A2K1YU74	B9H0P0_POPTR	A0A2K1YU74	B9H0P0	Uncharacterized protein.	Uncharacterized protein.	0.471
A0A2K1YU74	B9H354_POPTR	A0A2K1YU74	B9H354	Uncharacterized protein.	Uncharacterized protein.	0.485
A0A2K1YU74	B9H355_POPTR	A0A2K1YU74	B9H355	Uncharacterized protein.	Uncharacterized protein.	0.492

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