23 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K1WW98	Homeobox domain-containing protein. (553 aa)
	A0A2K1XJR1	Uncharacterized protein. (347 aa)
	A0A2K1Z3A8	AB hydrolase-1 domain-containing protein. (525 aa)
	A0A2K2A4R1	Homeobox domain-containing protein. (326 aa)
	A0A2K2A6V1	Homeobox domain-containing protein. (600 aa)
	A0A2K2AGX7	Homeobox domain-containing protein. (290 aa)
	A0A2K2BCN5	Homeobox domain-containing protein. (704 aa)
	A0A2K2BCP0	Homeobox domain-containing protein. (448 aa)
	A0A2K2C264	Homeobox domain-containing protein. (374 aa)
	A0A2K2C3V0	Uncharacterized protein. (180 aa)
	B9GF19_POPTR	Uncharacterized protein. (156 aa)
	B9GNK2_POPTR	HD-ZIP family protein. (269 aa)
	B9GP51_POPTR	Homeobox domain-containing protein. (295 aa)
	B9GYL8_POPTR	Homeobox domain-containing protein. (305 aa)
	B9HFT7_POPTR	HD-ZIP family protein. (273 aa)
	B9HL34_POPTR	Uncharacterized protein. (571 aa)
	B9HPS0_POPTR	Homeobox domain-containing protein. (383 aa)
	B9HT49_POPTR	Homeobox domain-containing protein. (479 aa)
	B9IIA1_POPTR	HD-ZIP family protein. (344 aa)
	B9IMJ9_POPTR	Uncharacterized protein. (334 aa)
	B9MUS1_POPTR	Homeobox domain-containing protein. (302 aa)
	U5FSF5_POPTR	Homeobox domain-containing protein. (298 aa)
	U5GDM3_POPTR	Protein kinase domain-containing protein. (373 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1WW98	A0A2K2A4R1	A0A2K1WW98	A0A2K2A4R1	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.404
A0A2K1WW98	A0A2K2C264	A0A2K1WW98	A0A2K2C264	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.404
A0A2K1WW98	B9GP51_POPTR	A0A2K1WW98	B9GP51	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.419
A0A2K1WW98	B9GYL8_POPTR	A0A2K1WW98	B9GYL8	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.419
A0A2K1WW98	B9HPS0_POPTR	A0A2K1WW98	B9HPS0	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.404
A0A2K1WW98	B9IIA1_POPTR	A0A2K1WW98	B9IIA1	Homeobox domain-containing protein.	HD-ZIP family protein.	0.404
A0A2K1WW98	B9MUS1_POPTR	A0A2K1WW98	B9MUS1	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.419
A0A2K1WW98	U5FSF5_POPTR	A0A2K1WW98	U5FSF5	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.419
A0A2K2A4R1	A0A2K1WW98	A0A2K2A4R1	A0A2K1WW98	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.404
A0A2K2A4R1	A0A2K2A6V1	A0A2K2A4R1	A0A2K2A6V1	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.404
A0A2K2A4R1	A0A2K2AGX7	A0A2K2A4R1	A0A2K2AGX7	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.417
A0A2K2A4R1	B9GNK2_POPTR	A0A2K2A4R1	B9GNK2	Homeobox domain-containing protein.	HD-ZIP family protein.	0.421
A0A2K2A4R1	B9HFT7_POPTR	A0A2K2A4R1	B9HFT7	Homeobox domain-containing protein.	HD-ZIP family protein.	0.417
A0A2K2A6V1	A0A2K2A4R1	A0A2K2A6V1	A0A2K2A4R1	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.404
A0A2K2A6V1	A0A2K2C264	A0A2K2A6V1	A0A2K2C264	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.404
A0A2K2A6V1	B9GP51_POPTR	A0A2K2A6V1	B9GP51	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.419
A0A2K2A6V1	B9GYL8_POPTR	A0A2K2A6V1	B9GYL8	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.419
A0A2K2A6V1	B9HPS0_POPTR	A0A2K2A6V1	B9HPS0	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.404
A0A2K2A6V1	B9IIA1_POPTR	A0A2K2A6V1	B9IIA1	Homeobox domain-containing protein.	HD-ZIP family protein.	0.404
A0A2K2A6V1	B9MUS1_POPTR	A0A2K2A6V1	B9MUS1	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.419

page 1 of 3

Server load: low (20%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Textmining

Fusion

Databases

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About